←Back to structures
IMGVR_UViG_3300029775_000005-3300029775-Ga0134843_100058460
Arc-VirIMGVR_UViG_3300029775_000005-3300029775-Ga0134843_100058460
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 57-152_222-245_329-400
Domain cluster:
rep: CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00442__D29-115_186-290
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j09A04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.64 | 25.0 | 3.76e-01 | 87.5% | 84.4% |
| 4h3tA02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.54 | 36.0 | 4.16e-01 | 91.1% | 92.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4891117 | 4038.1.1.11 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal | 0.73 | 68.0 | 4.72e-01 | 99.0% | 89.7% |
| 5004294 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.69 | 65.0 | 5.70e-01 | 99.0% | 89.3% |
| 3942126 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.67 | 64.0 | 5.38e-01 | 100.0% | 79.7% |
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.65 | 62.0 | 5.22e-01 | 100.0% | 78.7% |
| 4954546 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.65 | 62.0 | 5.31e-01 | 100.0% | 84.8% |
| 3164784 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.64 | 61.0 | 5.17e-01 | 100.0% | 77.7% |
| 3203302 | 101.1.17.33 ↗ | alpha arrays › HTH › HTH › FF domain › PF31246 | 0.59 | 27.0 | 3.67e-01 | 87.5% | 82.0% |
| 1691937 | 241.19.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Transposon Tn7 transposition protein TnsE C-terminal domain › Transposon Tn7 transposition protein TnsE C-terminal domain › TnsE_C | 0.56 | 29.0 | 3.17e-01 | 87.5% | 57.8% |
| 3724404 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.52 | 34.0 | 4.07e-01 | 100.0% | 99.2% |
| 3487890 | 3069.1.1.0 ↗ | alpha arrays › BART › BART › BART | 0.51 | 29.0 | 3.53e-01 | 79.7% | 87.8% |
| 3948092 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.50 | 48.0 | 4.64e-01 | 99.5% | 100.0% |
D2
medium
residues 153-221
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fm2B02 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.59 | 47.0 | 3.53e-01 | 88.4% | 53.6% |
| 2i7hA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 48.0 | 3.57e-01 | 98.6% | 62.0% |
| 1s3zA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 45.0 | 3.62e-01 | 97.1% | 53.1% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 40.0 | 4.01e-01 | 84.1% | 97.2% |
| 1l0oA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 40.0 | 3.25e-01 | 84.1% | 75.9% |
| 1ywqA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 44.0 | 3.25e-01 | 98.6% | 72.4% |
| 3nr5A00 | 3.40.1000.50 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Repressor of RNA polymerase III transcription Maf1 | 0.51 | 44.0 | 3.48e-01 | 100.0% | 54.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.55 | 40.0 | 2.50e-01 | 81.2% | 49.1% | |
| 3188373 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.55 | 40.0 | 2.46e-01 | 81.2% | 55.9% |
| 11066 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 45.0 | 3.62e-01 | 97.1% | 53.1% |
| 5078236 | 304.51.1.9 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6_N | 0.53 | 37.0 | 3.17e-01 | 76.8% | 56.0% |
| 3406489 | 213.1.1.19 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 | 0.51 | 44.0 | 3.54e-01 | 100.0% | 58.6% |
D3
medium
residues 246-328