←Back to structures

IMGVR_UViG_3300029775_000005-3300029775-Ga0134843_100058471

Arc-Vir

IMGVR_UViG_3300029775_000005-3300029775-Ga0134843_100058471

Identity

Kingdom:
archaea

Quality

64.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-84
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.51e-01 95.5% 86.4%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.62e-01 95.5% 74.7%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 5.48e-01 90.9% 92.5%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 63.0 5.89e-01 100.0% 83.1%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.42e-01 100.0% 65.0%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.30e-01 97.0% 85.9%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 4.86e-01 100.0% 65.2%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.67 50.0 4.70e-01 90.9% 65.1%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.65 56.0 5.30e-01 100.0% 80.2%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.18e-01 100.0% 89.9%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 54.0 4.03e-01 100.0% 70.7%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 46.0 4.46e-01 83.3% 79.5%
2k4jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.43e-01 98.5% 65.7%
2k6xA00 1.10.220.120 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Sigma-70 factor, region 1.1 0.60 47.0 4.62e-01 98.5% 81.9%
1z21A00 1.10.10.1000 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain 0.59 50.0 4.53e-01 100.0% 69.8%
4lgvA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 3.42e-01 100.0% 31.2%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.56 44.0 4.49e-01 92.4% 93.5%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.55 46.0 3.73e-01 100.0% 66.7%
3iu0A00 3.90.1360.10 Alpha Beta › Alpha-Beta Complex › Microbial transglutaminase. Chain: a › Protein-glutamine gamma-glutamyltransferase 0.54 44.0 2.86e-01 95.5% 18.4%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 42.0 4.09e-01 86.4% 76.7%
1qxyA00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.54 43.0 3.00e-01 92.4% 53.0%
1qzyA01 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.53 44.0 3.03e-01 100.0% 23.9%
7wm5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.16e-01 98.5% 36.2%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 39.0 2.86e-01 83.3% 72.8%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.51 41.0 3.86e-01 93.9% 71.1%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.51 44.0 3.67e-01 100.0% 79.7%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217750 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.85 69.0 6.81e-01 87.9% 82.9%
3416051 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.83 67.0 6.81e-01 87.9% 89.2%
3261857 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.83 65.0 6.63e-01 87.9% 86.2%
3740945 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.82 68.0 6.50e-01 89.4% 82.7%
3837298 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.79 60.0 6.24e-01 87.9% 88.3%
3576763 101.1.1.332 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Nucleolin_bd 0.79 62.0 6.32e-01 84.8% 86.2%
3236724 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.42e-01 95.5% 66.7%
3797632 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 6.25e-01 90.9% 93.8%
3663922 101.21.1.0 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit 0.74 56.0 5.78e-01 86.4% 90.0%
4559316 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.73 61.0 6.07e-01 92.4% 91.4%
3173095 101.1.1.51 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Slx4 0.73 62.0 5.81e-01 95.5% 77.5%
4214725 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.73 53.0 5.28e-01 86.4% 74.3%
3230219 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.72 63.0 5.78e-01 97.0% 82.4%
3347816 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.72 64.0 5.33e-01 100.0% 84.3%
3394868 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.72 60.0 5.31e-01 92.4% 66.3%
3932319 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.72 60.0 5.31e-01 92.4% 65.3%
3372110 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.72 60.0 5.97e-01 93.9% 90.0%
5078328 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.71 59.0 4.29e-01 93.9% 32.6%
3166133 101.1.2.103 ↗ alpha arrays › HTH › HTH › winged helix domain › SelB-wing_2 0.71 56.0 5.57e-01 95.5% 82.9%
3250201 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.71 57.0 5.80e-01 89.4% 93.8%
4618903 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.71 60.0 5.68e-01 95.5% 91.3%
5071551 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 5.42e-01 98.5% 73.7%
3936163 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.70 57.0 5.78e-01 89.4% 95.4%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.70 55.0 5.35e-01 86.4% 77.3%
5051570 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.09e-01 100.0% 69.6%
3994510 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 4.71e-01 98.5% 50.0%
5047341 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.14e-01 98.5% 66.7%
3462112 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.69 58.0 5.42e-01 95.5% 78.8%
4972260 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.27e-01 98.5% 73.7%
3786852 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.69 60.0 5.56e-01 100.0% 78.8%
3653189 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.69 56.0 5.67e-01 93.9% 95.4%
3643333 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.69 57.0 5.21e-01 95.5% 71.1%
4486889 101.1.1.51 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Slx4 0.68 61.0 5.85e-01 100.0% 88.0%
3795754 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.14e-01 98.5% 70.0%
3931563 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.68 53.0 5.50e-01 92.4% 95.0%
2897 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.67 50.0 4.96e-01 90.9% 77.1%
3726085 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.67 57.0 5.28e-01 97.0% 75.3%
4507639 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.67 53.0 5.13e-01 89.4% 93.3%
4595581 101.10.1.0 ↗ alpha arrays › HTH › Hypothetical protein YhaI › Hypothetical protein YhaI 0.66 57.0 4.72e-01 98.5% 66.7%
3167163 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.64 56.0 5.04e-01 100.0% 71.6%
3027876 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.64 53.0 4.98e-01 95.5% 79.8%
4983336 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.63 52.0 3.60e-01 93.9% 55.2%
4943136 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 44.0 4.01e-01 100.0% 66.7%