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IMGVR_UViG_3300029775_000395-3300029775-Ga0134843_100016121

Arc-Vir

IMGVR_UViG_3300029775_000395-3300029775-Ga0134843_100016121

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-63
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 5.27e-01 77.8% 61.8%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.04e-01 93.3% 58.9%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.61 45.0 4.35e-01 80.0% 69.2%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.58 40.0 3.43e-01 75.6% 41.6%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 45.0 3.77e-01 93.3% 52.6%
6ig5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 45.0 3.22e-01 97.8% 54.3%
3piwA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 40.0 2.83e-01 86.7% 37.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3387063 2006.1.1.14 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD 0.64 44.0 2.85e-01 71.1% 17.6%
4162420 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.61 44.0 3.17e-01 75.6% 27.2%
5016493 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.55 49.0 3.03e-01 100.0% 26.9%