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IMGVR_UViG_3300029775_000400-3300029775-Ga0134843_100053133

Arc-Vir

IMGVR_UViG_3300029775_000400-3300029775-Ga0134843_100053133

Identity

Kingdom:
archaea

Quality

65.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-200
PDB
D2 high residues 216-331
PDB
Domain cluster: rep: IMGVR_UViG_3300025589_000504-3300025589-Ga0209409_10095466__D2-102
D3 high residues 526-632
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 49.0 3.82e-01 77.6% 45.0%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.64 46.0 4.14e-01 73.8% 75.2%
7x4lC02 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.54 41.0 3.87e-01 79.4% 89.8%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.54 32.0 3.37e-01 71.0% 64.2%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 35.0 3.00e-01 75.7% 41.0%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 37.0 4.15e-01 78.5% 98.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3448946 3567.1.1.124 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Rx_N 0.80 39.0 4.11e-01 77.6% 52.0%
3708888 1134.1.2.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain 0.75 51.0 4.73e-01 81.3% 55.6%
3480888 2004.1.1.71 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.75 39.0 3.20e-01 74.8% 30.9%
4573852 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.63 43.0 5.13e-01 70.1% 100.0%
3955770 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.62 43.0 4.05e-01 74.8% 59.2%
3239030 7552.1.1.1 ↗ a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.62 43.0 2.66e-01 71.0% 26.4%
4025221 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 48.0 4.10e-01 82.2% 54.4%
3181590 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.61 44.0 5.03e-01 77.6% 100.0%
3404343 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.57 36.0 3.94e-01 75.7% 75.6%
4342098 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.80e-01 86.0% 94.7%
4023451 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.52 39.0 2.93e-01 82.2% 48.3%
3687320 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.51 36.0 3.56e-01 72.9% 96.5%
3743981 5081.1.1.2 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 0.51 37.0 3.08e-01 76.6% 69.5%
3270023 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.50 44.0 3.40e-01 98.1% 74.4%
D4 medium residues 335-481
PDB