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IMGVR_UViG_3300029798_000197-3300029798-Ga0239581_10058311

Arc-Vir

IMGVR_UViG_3300029798_000197-3300029798-Ga0239581_10058311

Identity

Kingdom:
archaea

Quality

66.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 800-878
PDB
D2 high residues 1124-1274
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4my0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 27.0 2.82e-01 88.1% 49.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2512677 237.1.1.11 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.62 55.0 5.16e-01 94.7% 84.7%
3943468 7581.1.1.0 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.52 40.0 3.24e-01 80.1% 98.6%
3315163 3125.1.1.1 ↗ alpha arrays › Asl3597 › Asl3597 › Asl3597 › CRR7 0.51 26.0 3.40e-01 85.4% 92.0%
D3 high residues 1283-1342
PDB
D4 high residues 1360-1435
PDB
D5 medium residues 143-267
PDB
D6 medium residues 268-324
PDB
D7 medium residues 325-364_513-557_687-741
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.63 35.0 3.47e-01 84.3% 49.7%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.60 35.0 3.38e-01 86.4% 48.5%
8amqA02 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 42.0 3.10e-01 80.7% 78.8%
2qwtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 36.0 3.46e-01 93.6% 59.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968715 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 40.0 3.24e-01 82.9% 92.9%
3387427 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.51 38.0 3.30e-01 77.1% 49.1%
3524385 3881.1.1.2 ↗ alpha bundles › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › Codanin-1_C 0.51 39.0 3.73e-01 79.3% 78.1%
D8 medium residues 365-460_742-773
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n3dB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.61 44.0 3.34e-01 74.2% 64.2%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 38.0 4.62e-01 98.4% 98.8%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.58 36.0 4.28e-01 98.4% 93.0%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.57 41.0 3.81e-01 73.4% 95.0%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.55 39.0 3.68e-01 74.2% 78.9%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.53 37.0 3.53e-01 72.7% 78.7%
1dj7A00 3.90.460.10 Alpha Beta › Alpha-Beta Complex › Ferredoxin Thioredoxin Reductase › Ferredoxin thioredoxin reductase catalytic beta subunit 0.50 36.0 3.88e-01 73.4% 100.0%
D9 medium residues 461-512
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z2mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 50.0 4.42e-01 82.7% 89.6%
2kmcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 47.0 3.86e-01 82.7% 77.5%
1ij5A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 52.0 3.90e-01 94.2% 55.7%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 47.0 4.30e-01 88.5% 86.3%
1zavA01 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.59 51.0 3.84e-01 100.0% 78.5%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 45.0 4.10e-01 88.5% 88.0%
1xd4A03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.58 41.0 2.77e-01 78.8% 84.2%
3ccgA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 47.0 3.28e-01 100.0% 94.2%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 38.0 3.39e-01 84.6% 87.1%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 3.13e-01 98.1% 81.8%
1f4qA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 42.0 3.08e-01 98.1% 81.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3396410 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.62 49.0 3.47e-01 90.4% 80.6%
5058140 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.61 41.0 3.35e-01 71.2% 56.0%
3890966 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 49.0 4.28e-01 96.2% 68.8%
3719802 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 46.0 3.73e-01 92.3% 72.7%
3488895 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.57 43.0 3.27e-01 92.3% 45.6%
5058376 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.15e-01 84.6% 38.9%
3250743 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 49.0 3.80e-01 98.1% 73.6%
3407330 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.55 41.0 3.94e-01 86.5% 100.0%
3251411 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 44.0 4.17e-01 94.2% 86.2%
3617230 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.53 40.0 3.76e-01 88.5% 98.6%
5067137 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 4.11e-01 92.3% 91.7%
D10 medium residues 558-686
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o60A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 38.0 3.43e-01 86.0% 48.4%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 33.0 3.40e-01 84.5% 57.9%
5dz2A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 45.0 3.42e-01 90.7% 89.8%
3es5A02 1.20.272.60 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 31.0 3.23e-01 83.7% 61.5%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.51 31.0 3.28e-01 91.5% 67.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008654 5069.1.1.26 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › NrfD 0.58 29.0 3.20e-01 80.6% 56.2%
3386552 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 30.0 3.96e-01 99.2% 92.9%
3542037 109.4.1.1428 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Edg1 0.57 34.0 2.78e-01 93.0% 31.2%
3202208 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 26.0 2.52e-01 87.6% 34.7%
4420136 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 31.0 3.93e-01 96.9% 98.6%
3744528 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 32.0 3.78e-01 99.2% 84.7%
3295757 3705.1.1.0 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) 0.55 28.0 2.91e-01 71.3% 50.4%
3658204 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.54 31.0 3.73e-01 97.7% 88.7%
3712669 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.54 30.0 2.93e-01 99.2% 49.3%
3325892 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.53 30.0 3.66e-01 100.0% 87.5%
3599305 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.53 29.0 3.62e-01 100.0% 87.5%
3626235 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 37.0 2.77e-01 74.4% 67.7%
3615712 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.50 35.0 3.97e-01 100.0% 95.8%
D11 medium residues 882-1011
PDB