←Back to structures

IMGVR_UViG_3300029822_000014-3300029822-Ga0134854_100051518

Arc-Vir

IMGVR_UViG_3300029822_000014-3300029822-Ga0134854_100051518

Identity

Kingdom:
archaea

Quality

93.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-56
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 65.0 6.24e-01 96.4% 77.4%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.79 59.0 5.73e-01 80.4% 77.4%
1zbsA03 1.10.720.160 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.78 59.0 5.07e-01 82.1% 100.0%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 60.0 4.29e-01 98.2% 36.1%
2pt5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 52.0 3.70e-01 83.9% 40.7%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 55.0 4.43e-01 96.4% 46.1%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.66 52.0 4.63e-01 94.6% 58.8%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.66 52.0 3.28e-01 89.3% 15.7%
3otdA00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.65 59.0 3.81e-01 100.0% 41.2%
1aipH03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 42.0 4.40e-01 91.1% 75.0%
6ictA01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.63 54.0 3.40e-01 100.0% 57.2%
3mxnA02 6.10.140.770 Special › Helix non-globular › Helix Hairpins › 0.62 47.0 4.80e-01 82.1% 92.7%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.61 53.0 3.79e-01 100.0% 33.9%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 49.0 3.62e-01 98.2% 34.5%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 49.0 4.39e-01 89.3% 84.4%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 32.0 2.87e-01 89.3% 32.1%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 42.0 3.62e-01 82.1% 70.1%
5ekdA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.50 40.0 3.33e-01 94.6% 75.7%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.50 36.0 3.61e-01 83.9% 73.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222360 103.1.1.21 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID 0.89 62.0 6.84e-01 73.2% 100.0%
None — 0.85 61.0 3.72e-01 76.8% 14.0%
4028002 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.83 58.0 5.85e-01 73.2% 80.0%
1030234 103.1.1.21 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID 0.79 59.0 5.73e-01 80.4% 77.4%
None — 0.74 64.0 3.88e-01 100.0% 15.5%
5052428 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.73 60.0 5.24e-01 89.3% 65.5%
5079633 7094.1.1.4 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › PF27273 0.73 60.0 5.18e-01 89.3% 64.7%
4942849 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.73 52.0 3.54e-01 98.2% 22.1%
3238848 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 55.0 5.76e-01 87.5% 100.0%
3347020 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.66 55.0 5.55e-01 89.3% 90.9%
3748535 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 57.0 3.91e-01 100.0% 80.0%
3497102 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 57.0 3.55e-01 100.0% 57.0%
4195932 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 58.0 3.37e-01 100.0% 72.2%
4024394 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.60 57.0 4.07e-01 100.0% 41.4%
3391086 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 47.0 2.83e-01 98.2% 11.3%
None — 0.54 43.0 2.69e-01 87.5% 34.2%
2786 101.1.4.6 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.51 41.0 3.76e-01 100.0% 66.7%