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IMGVR_UViG_3300029822_000014-3300029822-Ga0134854_100051527

Arc-Vir

IMGVR_UViG_3300029822_000014-3300029822-Ga0134854_100051527

Identity

Kingdom:
archaea

Quality

85.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 106-151
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ju4A01 3.30.750.60 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Endosialidase, N-terminal extension domain 0.68 48.0 4.21e-01 87.0% 48.6%
4hizA01 3.30.750.60 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Endosialidase, N-terminal extension domain 0.67 47.0 4.85e-01 87.0% 83.3%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 54.0 4.37e-01 100.0% 50.0%
4n2kA01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.64 52.0 4.00e-01 97.8% 76.5%
1a10I00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.64 46.0 4.22e-01 82.6% 58.7%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.63 54.0 4.59e-01 100.0% 96.2%
4ms4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 53.0 3.56e-01 100.0% 30.4%
3hutA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 54.0 3.76e-01 100.0% 32.7%
1cseI00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.61 45.0 4.13e-01 82.6% 60.3%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 53.0 3.56e-01 100.0% 28.3%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 49.0 3.51e-01 100.0% 55.8%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 53.0 3.61e-01 100.0% 29.9%
1xezA01 3.30.110.130 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain 0.60 49.0 4.23e-01 100.0% 92.6%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 3.59e-01 100.0% 81.7%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 44.0 2.84e-01 87.0% 18.0%
5z1gB01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.56 46.0 3.14e-01 100.0% 36.8%
4zo2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 44.0 2.84e-01 100.0% 24.9%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 39.0 2.55e-01 76.1% 27.1%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.56 38.0 3.96e-01 87.0% 81.0%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.30e-01 95.7% 93.7%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 42.0 3.26e-01 87.0% 36.0%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 42.0 2.97e-01 100.0% 62.7%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.55 43.0 3.69e-01 100.0% 56.0%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 42.0 3.63e-01 100.0% 54.8%
1v4nA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 37.0 2.43e-01 76.1% 26.7%
1lwuC01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.54 43.0 3.19e-01 100.0% 33.1%
1erjB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.55e-01 95.7% 79.3%
7jptA01 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 38.0 3.11e-01 100.0% 78.0%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 43.0 2.85e-01 97.8% 94.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3892257 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 58.0 4.34e-01 100.0% 40.0%
3479718 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.68 56.0 4.28e-01 100.0% 41.7%
5074348 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.67 57.0 4.12e-01 100.0% 37.9%
3509348 214.1.1.15 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 0.66 55.0 3.43e-01 100.0% 20.3%
4977613 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.66 56.0 4.05e-01 100.0% 37.9%
4030408 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.64 54.0 3.53e-01 100.0% 61.6%
3937854 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 53.0 4.27e-01 100.0% 48.0%
3240191 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.64 53.0 4.02e-01 100.0% 41.6%
3218472 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 53.0 4.02e-01 100.0% 40.0%
5070318 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.63 52.0 3.49e-01 100.0% 58.1%
5035105 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.62 52.0 3.15e-01 100.0% 16.3%
3579037 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 51.0 4.11e-01 100.0% 45.7%
4968790 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.62 52.0 3.14e-01 100.0% 16.3%
4972053 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.61 51.0 3.06e-01 100.0% 15.7%
3385678 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.61 50.0 3.37e-01 100.0% 57.8%
3941356 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 49.0 3.77e-01 97.8% 40.0%
5062548 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.61 50.0 3.04e-01 100.0% 16.1%
5066221 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.60 49.0 3.15e-01 100.0% 23.5%
4981147 2008.1.1.3 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.60 50.0 3.56e-01 100.0% 55.2%
3230624 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.60 50.0 3.41e-01 100.0% 29.2%
4976644 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.60 48.0 3.11e-01 100.0% 23.5%
5061935 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.59 49.0 2.99e-01 100.0% 16.3%
3238323 3535.1.1.0 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.59 47.0 3.70e-01 100.0% 54.2%
3617276 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 48.0 3.69e-01 97.8% 39.2%
3457336 294.1.1.1 ↗ a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit 0.59 43.0 3.82e-01 80.4% 62.9%
4062573 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.59 49.0 4.00e-01 100.0% 76.0%
5079381 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.59 49.0 3.11e-01 100.0% 55.2%
3625308 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 46.0 3.60e-01 100.0% 39.2%
3581699 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 47.0 3.68e-01 97.8% 41.7%
3386772 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.58 48.0 3.07e-01 100.0% 27.5%
4963881 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.58 46.0 2.99e-01 100.0% 22.6%
5031206 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 3.95e-01 95.7% 91.3%
4996275 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.57 49.0 2.93e-01 100.0% 37.3%
3279158 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.57 42.0 2.64e-01 97.8% 13.2%
3344424 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 46.0 2.90e-01 100.0% 25.2%
5080060 7575.1.1.4 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.56 44.0 2.72e-01 100.0% 17.1%
3704044 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 48.0 3.06e-01 100.0% 20.0%
3517867 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.56 43.0 3.34e-01 97.8% 67.7%
3701985 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.55 41.0 2.39e-01 82.6% 8.4%
4025905 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 43.0 2.82e-01 91.3% 94.0%
5012933 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 45.0 3.68e-01 100.0% 60.0%
4985067 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.53 44.0 2.64e-01 100.0% 37.4%
3502916 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 42.0 3.05e-01 100.0% 96.8%
3600644 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.13e-01 97.8% 68.0%
5056879 11.1.1.33 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.51 38.0 2.92e-01 91.3% 66.4%
5041793 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.51 34.0 2.94e-01 73.9% 61.1%
1503101 2484.1.1.30 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Carbam_trans_N 0.51 35.0 2.26e-01 71.7% 13.7%
3574976 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.50 39.0 3.78e-01 93.5% 92.7%
4250626 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 39.0 3.00e-01 100.0% 61.5%
D2 medium residues 164-204
PDB
Domain cluster: representative