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IMGVR_UViG_3300029822_000038-3300029822-Ga0134854_100084420

Arc-Vir

IMGVR_UViG_3300029822_000038-3300029822-Ga0134854_100084420

Identity

Kingdom:
archaea

Quality

73.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-75
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 56.0 5.26e-01 71.0% 61.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 56.0 5.08e-01 71.0% 56.1%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 52.0 3.50e-01 77.4% 80.6%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 53.0 4.37e-01 90.3% 86.8%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.64 43.0 4.42e-01 82.3% 73.3%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.60 46.0 4.01e-01 85.5% 75.8%
7kpsB01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 45.0 3.24e-01 87.1% 45.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979322 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.82 59.0 5.70e-01 75.8% 72.9%
3998215 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.82 64.0 6.01e-01 83.9% 72.0%
5074546 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 59.0 5.23e-01 75.8% 58.8%
3657625 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.80 71.0 6.30e-01 95.2% 71.8%
3941666 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.80 56.0 5.30e-01 74.2% 64.9%
3909938 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.79 61.0 5.36e-01 82.3% 68.9%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 57.0 5.18e-01 75.8% 62.5%
3333387 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.79 72.0 5.33e-01 100.0% 72.0%
3590474 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 5.43e-01 83.9% 61.2%
4965486 129.1.1.11 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C 0.76 55.0 4.34e-01 77.4% 56.8%
3886268 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.75 64.0 5.23e-01 93.5% 60.9%
4927804 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.93e-01 93.5% 86.7%
3942921 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 3.50e-01 77.4% 34.0%
4978129 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 51.0 3.16e-01 95.2% 73.2%
4948292 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.57 49.0 3.54e-01 96.8% 94.0%