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IMGVR_UViG_3300029822_000038-3300029822-Ga0134854_100084460

Arc-Vir

IMGVR_UViG_3300029822_000038-3300029822-Ga0134854_100084460

Identity

Kingdom:
archaea

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-265
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.68 31.0 4.59e-01 78.6% 100.0%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.67 32.0 4.57e-01 70.1% 100.0%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.67 33.0 4.66e-01 72.6% 98.2%
3j4uH00 2.60.120.1110 Mainly Beta › Sandwich › Jelly Rolls › 0.65 38.0 4.76e-01 94.0% 95.0%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.64 34.0 4.57e-01 82.9% 96.7%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 28.0 4.04e-01 79.9% 95.8%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 30.0 4.18e-01 86.3% 96.3%
4a3zA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 33.0 4.18e-01 71.4% 87.5%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.59 34.0 4.15e-01 71.4% 88.9%
3ht1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 30.0 3.70e-01 85.5% 80.3%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.56 32.0 4.16e-01 72.6% 100.0%
7t7zA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.56 35.0 4.32e-01 76.1% 98.6%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 34.0 4.21e-01 76.5% 98.6%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 34.0 4.14e-01 84.6% 94.7%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 30.0 3.88e-01 88.0% 95.2%
2o8qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 27.0 3.51e-01 91.0% 85.2%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 33.0 4.08e-01 76.5% 96.6%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 33.0 4.02e-01 76.9% 96.5%
1gnyA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 34.0 4.11e-01 85.0% 96.7%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 32.0 3.98e-01 76.9% 97.8%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.53 34.0 4.09e-01 93.2% 95.5%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.53 38.0 4.18e-01 91.5% 89.5%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 34.0 4.03e-01 87.2% 93.7%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 3.99e-01 81.2% 86.7%
2y8kA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 33.0 4.09e-01 76.5% 98.6%
1oh4A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 36.0 4.07e-01 76.9% 91.4%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 36.0 4.06e-01 77.4% 91.6%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 35.0 4.13e-01 92.3% 97.6%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 35.0 4.08e-01 77.8% 96.4%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.64e-01 72.2% 78.9%
1r17A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 33.0 3.91e-01 86.3% 96.2%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.54e-01 72.2% 76.5%
1wmxA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 36.0 4.08e-01 77.8% 97.7%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 37.0 4.22e-01 89.7% 100.0%
1mec100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.40e-01 71.4% 83.9%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3241031 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.67 35.0 4.84e-01 76.9% 100.0%
3552373 10.2.1.31 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin 0.67 33.0 4.67e-01 70.1% 99.1%
3624575 10.32.1.72 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.66 36.0 4.80e-01 70.1% 100.0%
3026406 10.2.1.57 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Bbp16 0.65 37.0 4.85e-01 92.7% 100.0%
5030450 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 36.0 4.42e-01 70.5% 91.0%
5039365 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 35.0 4.42e-01 79.5% 97.8%
5025469 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 34.0 4.38e-01 73.1% 98.4%
3690841 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 33.0 4.24e-01 72.2% 93.3%
3400203 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.59 32.0 4.24e-01 79.9% 96.8%
2797580 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.59 34.0 4.01e-01 71.4% 81.0%
3281599 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.59 32.0 4.23e-01 90.2% 97.6%
3228772 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 32.0 4.18e-01 80.8% 98.3%
3790075 10.32.1.222 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ATRN 0.59 34.0 4.36e-01 79.5% 100.0%
3397106 10.32.1.222 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_ATRN 0.58 31.0 4.17e-01 70.9% 99.2%
5071112 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 33.0 4.24e-01 77.8% 96.3%
5038393 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 33.0 4.19e-01 73.5% 95.6%
1397793 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.57 32.0 4.12e-01 76.9% 94.0%
4003995 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 37.0 4.48e-01 79.9% 100.0%
4012587 10.32.1.232 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4360 0.57 38.0 4.33e-01 79.5% 91.2%
5033393 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 35.0 4.32e-01 76.9% 96.0%
4968129 11.1.1.1424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.56 24.0 3.48e-01 93.2% 85.7%
4970082 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 34.0 3.95e-01 76.9% 83.6%
3276474 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 35.0 4.22e-01 84.6% 96.8%
4102071 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.54 34.0 4.15e-01 77.8% 97.3%
3249076 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 33.0 3.99e-01 83.8% 94.5%
3242233 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 26.0 3.52e-01 82.5% 93.3%
1147 10.32.1.15 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_15 0.54 34.0 4.11e-01 85.0% 96.7%
3990817 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 34.0 3.90e-01 89.7% 84.0%
3941823 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.53 34.0 4.11e-01 77.8% 98.0%
4942248 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 32.0 4.00e-01 84.6% 97.2%
3598580 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 32.0 3.95e-01 88.5% 96.6%
3314257 10.32.1.193 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP 0.51 35.0 3.97e-01 88.0% 92.0%
5029611 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 35.0 3.94e-01 87.2% 89.7%
3236664 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.50 37.0 4.00e-01 93.6% 89.2%
1166 10.32.1.80 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM30 0.50 36.0 4.08e-01 77.8% 97.7%