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IMGVR_UViG_3300029822_000130-3300029822-Ga0134854_10023357

Arc-Vir

IMGVR_UViG_3300029822_000130-3300029822-Ga0134854_10023357

Quality

92.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-141
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.79 58.0 5.80e-01 100.0% 74.4%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.79 58.0 5.68e-01 100.0% 72.0%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.77 57.0 6.26e-01 100.0% 95.8%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.71 56.0 5.92e-01 100.0% 98.7%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.68 57.0 5.62e-01 100.0% 85.9%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.68 50.0 5.23e-01 100.0% 86.1%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.67 55.0 5.59e-01 100.0% 91.7%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.67 55.0 5.52e-01 97.7% 89.7%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 56.0 5.56e-01 100.0% 94.6%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.69e-01 71.3% 93.2%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 55.0 5.40e-01 100.0% 90.4%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 53.0 5.33e-01 100.0% 93.3%
5zl6A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.62 56.0 4.62e-01 100.0% 64.2%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.39e-01 71.3% 93.8%
1vwxf00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.61 54.0 5.06e-01 100.0% 91.7%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 54.0 4.86e-01 100.0% 92.6%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.60 53.0 5.31e-01 100.0% 94.4%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 52.0 5.21e-01 97.7% 100.0%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 50.0 5.08e-01 98.9% 100.0%
2qtlA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 51.0 4.84e-01 100.0% 99.1%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 4.38e-01 97.7% 77.2%
4dzdA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.58 39.0 4.25e-01 78.2% 85.7%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.57 37.0 3.94e-01 70.1% 74.0%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.57 44.0 4.24e-01 93.1% 73.7%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.74e-01 92.0% 72.1%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.55 36.0 3.86e-01 98.9% 78.1%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.55 35.0 3.92e-01 96.6% 90.2%
2q7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 4.02e-01 96.6% 82.7%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.18e-01 100.0% 80.8%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.53 45.0 4.01e-01 98.9% 83.0%
4kx7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.52 44.0 3.33e-01 93.1% 90.4%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.52 36.0 3.87e-01 71.3% 94.7%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.52 43.0 3.32e-01 93.1% 91.2%
2c9aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.03e-01 100.0% 83.5%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.48e-01 81.6% 90.0%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.50 37.0 3.45e-01 78.2% 89.2%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4111597 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.81 58.0 6.59e-01 97.7% 100.0%
4526316 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.80 59.0 5.74e-01 100.0% 70.5%
3199895 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.80 59.0 5.71e-01 100.0% 70.5%
4854958 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.80 58.0 5.67e-01 100.0% 69.8%
4128405 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.79 58.0 6.37e-01 100.0% 95.7%
4407497 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.79 56.0 6.36e-01 96.6% 100.0%
3978877 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 64.0 6.38e-01 100.0% 84.4%
4518787 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.77 60.0 6.43e-01 98.9% 96.0%
None 0.73 53.0 3.56e-01 95.4% 19.7%
5046975 1.1.7.21 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.71 55.0 5.68e-01 100.0% 90.0%
4211588 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 63.0 3.92e-01 100.0% 18.3%
3389763 1.1.7.45 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.70 58.0 5.71e-01 100.0% 83.2%
5024154 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 56.0 5.70e-01 100.0% 88.2%
5073223 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 55.0 5.58e-01 100.0% 85.9%
3600462 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 55.0 5.69e-01 100.0% 91.3%
4060574 1.1.7.70 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.70 57.0 6.09e-01 89.7% 100.0%
4999166 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 54.0 5.73e-01 97.7% 94.7%
3710481 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.69 58.0 5.78e-01 100.0% 88.9%
4642133 1.1.7.21 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.69 54.0 4.97e-01 100.0% 65.5%
3996398 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 57.0 5.81e-01 100.0% 91.8%
3555622 1.1.7.21 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.69 53.0 5.68e-01 100.0% 96.0%
3358216 1.1.7.21 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.69 53.0 4.96e-01 100.0% 65.5%
4333010 1.1.7.70 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.69 56.0 5.97e-01 88.5% 100.0%
5038467 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 56.0 5.90e-01 97.7% 98.7%
3234172 1.1.7.45 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.69 57.0 5.65e-01 100.0% 86.7%
4395103 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 59.0 5.83e-01 100.0% 88.9%
4457938 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.68 62.0 5.45e-01 100.0% 72.8%
5041618 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.68 59.0 5.80e-01 100.0% 88.3%
5051893 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.68 56.0 5.80e-01 100.0% 98.8%
5070852 1.1.8.25 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › ARPP-1 0.68 53.0 5.06e-01 98.9% 71.4%
4644809 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.67 61.0 5.52e-01 100.0% 80.0%
4580145 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.66 49.0 4.97e-01 82.8% 80.0%
4328622 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.65 58.0 5.34e-01 100.0% 78.3%
3732331 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.65 56.0 5.24e-01 100.0% 76.4%
3649175 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 53.0 3.44e-01 90.8% 20.8%
4954736 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 5.40e-01 97.7% 94.1%
4066771 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 57.0 5.60e-01 100.0% 90.5%
3510937 1.1.7.45 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.64 57.0 5.41e-01 100.0% 84.8%
4042216 1.1.7.70 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.63 51.0 5.41e-01 87.4% 100.0%
3950185 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 47.0 4.66e-01 86.2% 77.8%
4000316 1.1.7.45 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.62 55.0 5.32e-01 100.0% 91.0%
3250968 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 46.0 3.61e-01 100.0% 36.0%
4085735 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 52.0 5.15e-01 100.0% 91.1%
3487595 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 44.0 3.91e-01 78.2% 64.6%
1877267 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.20e-01 100.0% 54.8%
3225094 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.60 44.0 3.33e-01 100.0% 30.0%
1862382 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.60 49.0 4.41e-01 100.0% 64.5%
3975943 11.1.1.42 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.60 44.0 4.44e-01 100.0% 77.8%
5002657 12.1.1.114 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.59 46.0 4.70e-01 100.0% 90.6%
3261760 11.1.1.698 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.59 46.0 4.64e-01 100.0% 88.2%
4109849 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.58 43.0 4.37e-01 78.2% 92.9%
3274538 11.1.1.698 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.58 45.0 4.59e-01 100.0% 87.1%
3272261 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.58 48.0 4.72e-01 100.0% 85.3%
3254695 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.58 47.0 4.61e-01 100.0% 83.2%
4174934 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.57 42.0 4.37e-01 79.3% 92.8%
3250946 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.86e-01 100.0% 90.5%
3258439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.45e-01 100.0% 81.1%
4403111 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 49.0 4.81e-01 100.0% 89.5%
1942248 11.1.1.353 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TarS_C2 0.57 45.0 4.65e-01 98.9% 93.8%
3276842 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.42e-01 100.0% 73.3%
3227984 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 47.0 4.53e-01 100.0% 86.0%
3249571 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 4.15e-01 100.0% 77.9%
5024095 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.55 45.0 3.37e-01 92.0% 60.9%
4059476 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.28e-01 100.0% 80.8%
3861216 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.54 43.0 4.21e-01 100.0% 80.0%
3912824 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 43.0 4.27e-01 100.0% 83.2%
4970326 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 44.0 4.35e-01 100.0% 87.4%
3761126 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.54 43.0 4.20e-01 100.0% 80.0%
4399143 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.53 42.0 4.11e-01 100.0% 79.0%
5062648 11.1.1.171 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.53 43.0 4.04e-01 98.9% 72.7%
3557152 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 4.12e-01 100.0% 80.0%
4012945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.91e-01 72.4% 100.0%
3552412 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.53 43.0 4.13e-01 100.0% 80.0%
4267140 11.1.1.171 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.52 44.0 4.10e-01 98.9% 81.7%
4931334 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.96e-01 100.0% 79.0%
3284835 11.4.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 0.51 44.0 3.93e-01 100.0% 86.9%
3777092 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.01e-01 100.0% 79.1%
5062794 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 4.14e-01 100.0% 91.0%
4929255 11.1.1.65 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CopC 0.50 39.0 3.71e-01 93.1% 70.0%