Back to structures

IMGVR_UViG_3300029822_000863-3300029822-Ga0134854_100065536

Arc-Vir

IMGVR_UViG_3300029822_000863-3300029822-Ga0134854_100065536

Quality

78.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-81
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.80 64.0 5.37e-01 98.5% 52.7%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.78 63.0 5.15e-01 89.7% 47.6%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.78 57.0 5.48e-01 77.9% 73.1%
2xtcA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.78 49.0 4.79e-01 76.5% 59.5%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.74 64.0 4.76e-01 95.6% 66.7%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.73 48.0 4.85e-01 89.7% 68.7%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.72 47.0 4.60e-01 89.7% 62.2%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 61.0 5.04e-01 97.1% 95.7%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.68 56.0 4.57e-01 92.6% 57.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.67 47.0 3.89e-01 85.3% 42.2%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 58.0 4.96e-01 100.0% 99.1%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.65 48.0 4.37e-01 77.9% 83.1%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 46.0 3.84e-01 75.0% 79.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.63 51.0 4.40e-01 92.6% 57.8%
4b0zA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 54.0 3.84e-01 100.0% 56.8%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 47.0 3.73e-01 88.2% 51.7%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.59 48.0 4.59e-01 86.8% 92.2%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 50.0 4.32e-01 100.0% 100.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 45.0 4.44e-01 83.8% 97.3%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 42.0 3.71e-01 82.4% 52.5%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 42.0 3.44e-01 83.8% 50.3%
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.56 42.0 3.52e-01 83.8% 62.0%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.55 45.0 3.43e-01 92.6% 64.0%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3684428 109.4.1.1258 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.78 58.0 3.53e-01 79.4% 20.0%
3339002 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.77 52.0 5.07e-01 72.1% 64.0%
3816680 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.76 52.0 3.20e-01 72.1% 26.5%
3381993 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.76 52.0 3.49e-01 72.1% 19.6%
3655099 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.75 51.0 3.75e-01 70.6% 47.4%
3306869 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.75 53.0 3.36e-01 73.5% 24.5%
3356804 109.4.1.1295 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.75 52.0 3.37e-01 72.1% 39.3%
3275552 109.4.1.1334 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long 0.75 51.0 3.29e-01 72.1% 16.0%
3828593 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.75 52.0 4.04e-01 72.1% 35.0%
3423632 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.74 50.0 3.05e-01 70.6% 19.7%
3814766 109.4.1.1262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.74 51.0 3.98e-01 72.1% 57.1%
3354705 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.74 50.0 3.66e-01 70.6% 42.9%
3888928 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 47.0 4.43e-01 75.0% 55.0%
3834065 109.4.1.1257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.73 52.0 4.47e-01 73.5% 79.6%
3669282 109.4.1.1257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.73 50.0 3.85e-01 72.1% 52.7%
3815090 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.73 50.0 4.34e-01 70.6% 79.0%
3676107 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.73 49.0 4.01e-01 70.6% 39.2%
3818397 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.73 50.0 3.93e-01 72.1% 57.1%
3810356 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.72 49.0 3.77e-01 70.6% 70.7%
3804088 109.4.1.1292 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.72 51.0 3.73e-01 73.5% 62.9%
3297737 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.72 50.0 4.28e-01 72.1% 75.2%
3454451 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.72 50.0 3.95e-01 72.1% 81.5%
3823022 109.4.1.1282 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.72 50.0 4.03e-01 72.1% 63.2%
3338362 109.4.1.1261 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.72 50.0 3.69e-01 72.1% 47.1%
3642759 109.4.1.1262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.72 50.0 3.77e-01 72.1% 51.0%
3679877 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.72 50.0 3.97e-01 73.5% 76.4%
3329314 109.4.1.1308 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, TPR_24 0.72 51.0 3.17e-01 73.5% 30.1%
3812742 109.4.1.1262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.72 50.0 3.88e-01 72.1% 74.3%
3831759 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.72 51.0 4.02e-01 73.5% 82.3%
3448421 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.72 51.0 4.16e-01 73.5% 89.2%
3441756 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.71 50.0 3.71e-01 73.5% 62.9%
3651529 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.71 50.0 3.80e-01 73.5% 50.6%
3811350 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.71 50.0 3.92e-01 73.5% 76.4%
3665637 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.71 48.0 3.82e-01 70.6% 78.5%
3811697 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.71 49.0 4.23e-01 72.1% 76.2%
3656332 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.71 48.0 3.39e-01 70.6% 38.1%
3329668 109.4.1.1296 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long, TPR_24 0.71 49.0 3.38e-01 72.1% 36.7%
3665473 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.70 49.0 3.83e-01 72.1% 79.3%
3426412 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.70 51.0 4.02e-01 76.5% 59.3%
3653408 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.70 49.0 3.68e-01 73.5% 64.7%
3682097 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.70 50.0 3.85e-01 73.5% 51.7%
3806841 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.70 48.0 3.40e-01 70.6% 53.5%
3647426 109.4.1.1365 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, TPR_24 0.70 50.0 4.18e-01 73.5% 97.3%
3363652 109.4.1.1365 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, TPR_24 0.70 52.0 3.67e-01 77.9% 56.9%
3699906 109.4.1.1522 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, PPR_3, TPR_24 0.69 50.0 3.94e-01 76.5% 80.0%
3804774 109.4.1.1261 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.69 51.0 3.94e-01 77.9% 78.6%
3658999 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.68 47.0 4.16e-01 72.1% 82.0%
3295970 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.68 48.0 3.65e-01 73.5% 66.9%
3316270 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.67 49.0 3.71e-01 77.9% 83.0%
3813895 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 57.0 3.68e-01 100.0% 49.1%
3699907 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 52.0 3.74e-01 83.8% 82.8%
3337013 109.4.1.1331 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif 0.64 57.0 3.24e-01 97.1% 30.5%
3667280 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.63 49.0 3.51e-01 83.8% 87.0%
3659725 109.4.1.1383 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.63 56.0 3.27e-01 100.0% 40.0%
3641429 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.63 55.0 3.66e-01 100.0% 65.2%
3299201 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 52.0 3.70e-01 97.1% 83.1%
3356833 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.62 56.0 3.23e-01 100.0% 36.2%
3378104 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 50.0 3.25e-01 91.2% 62.8%
3645892 109.4.1.1295 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.61 55.0 3.44e-01 100.0% 61.0%
3808965 109.4.1.1519 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 0.61 54.0 3.82e-01 100.0% 96.3%
3667440 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 52.0 3.63e-01 92.6% 85.4%
3668277 109.4.1.1279 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 0.61 54.0 3.61e-01 100.0% 91.9%
3462080 109.4.1.1383 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.60 54.0 3.35e-01 100.0% 58.7%
3822595 109.4.1.1262 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.60 51.0 3.71e-01 97.1% 99.0%
3676413 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.60 52.0 3.57e-01 95.6% 93.8%
3297740 109.4.1.1271 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.59 53.0 3.42e-01 100.0% 97.5%
3448903 109.4.1.1275 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 0.59 50.0 3.37e-01 97.1% 61.7%
3338685 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.59 52.0 3.42e-01 97.1% 77.5%
3361703 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.59 51.0 3.44e-01 95.6% 84.0%
3376612 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.59 52.0 3.46e-01 97.1% 73.1%
3307626 109.4.1.1295 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.58 51.0 3.55e-01 97.1% 93.3%
3678079 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.58 50.0 3.38e-01 100.0% 64.1%
3306314 109.4.1.1261 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.58 48.0 3.75e-01 100.0% 89.7%
3655270 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 50.0 3.40e-01 100.0% 84.0%
3671344 109.4.1.1371 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif 0.57 51.0 3.10e-01 100.0% 56.5%
3679981 109.4.1.1279 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 0.57 51.0 3.25e-01 100.0% 82.1%
3354085 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 46.0 3.30e-01 98.5% 77.6%
3379203 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 50.0 3.05e-01 100.0% 56.0%
3431479 109.4.1.1908 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, E_motif 0.55 48.0 3.23e-01 100.0% 87.6%