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IMGVR_UViG_3300029822_000863-3300029822-Ga0134854_10006557

Arc-Vir

IMGVR_UViG_3300029822_000863-3300029822-Ga0134854_10006557

Identity

Kingdom:
archaea

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-103
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.63 43.0 4.69e-01 100.0% 87.7%
4zbwA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 46.0 4.75e-01 80.8% 82.3%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 41.0 4.68e-01 82.8% 100.0%
5ljmA00 1.20.58.2190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 33.0 2.69e-01 79.8% 26.1%
1h0hB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 31.0 3.67e-01 87.9% 78.1%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.21e-01 93.9% 63.0%
1c4zA01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.56 28.0 2.44e-01 94.9% 28.7%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 39.0 4.29e-01 82.8% 96.1%
7utzR02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 42.0 3.07e-01 82.8% 97.8%
6mgiA03 1.20.1440.90 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Phosphoenolpyruvate/pyruvate domain 0.53 43.0 3.97e-01 93.9% 97.1%
1nu7D02 1.20.120.760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 0.52 43.0 3.94e-01 89.9% 68.8%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.19e-01 92.9% 89.5%
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 43.0 3.30e-01 88.9% 54.0%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 36.0 2.82e-01 71.7% 89.9%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 45.0 3.79e-01 100.0% 72.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941783 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.79 65.0 6.63e-01 87.9% 100.0%
3856774 110.1.1.18 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.68 61.0 5.27e-01 100.0% 71.9%
3735848 109.4.1.1553 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28151 0.59 41.0 2.35e-01 71.7% 12.3%
4582078 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.58 24.0 3.16e-01 86.9% 70.0%
2982752 1189.1.1.2 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B 0.56 49.0 3.41e-01 98.0% 85.3%
5052301 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 40.0 3.51e-01 74.7% 75.9%
3372756 3826.1.1.64 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › LUC7 0.54 35.0 2.81e-01 71.7% 32.2%
3210439 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.53 38.0 3.19e-01 76.8% 71.4%
4352824 2485.1.1.41 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_4 0.52 34.0 2.86e-01 91.9% 36.2%
4251053 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 34.0 2.49e-01 99.0% 25.9%
3483570 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 38.0 3.88e-01 89.9% 81.1%
4034615 632.5.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylocoagulase › Staphylocoagulase › Coagulase 0.51 42.0 3.76e-01 89.9% 62.9%
4473703 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.51 46.0 3.40e-01 100.0% 66.9%
5057901 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.51 27.0 3.50e-01 91.9% 98.0%
3498627 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.50 33.0 2.51e-01 89.9% 26.7%