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IMGVR_UViG_3300029822_000952-3300029822-Ga0134854_100151015

Arc-Vir

IMGVR_UViG_3300029822_000952-3300029822-Ga0134854_100151015

Quality

87.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-65
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4do8A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.70 50.0 4.79e-01 89.3% 65.2%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.68 51.0 5.22e-01 85.7% 86.8%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.68 54.0 3.63e-01 94.6% 23.0%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.67 52.0 4.60e-01 85.7% 95.2%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 51.0 3.84e-01 85.7% 91.5%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 4.43e-01 92.9% 59.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 53.0 3.90e-01 98.2% 39.5%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 47.0 3.51e-01 80.4% 55.2%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 52.0 4.46e-01 94.6% 65.3%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 50.0 4.40e-01 91.1% 63.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 51.0 4.47e-01 98.2% 71.7%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.61 51.0 4.07e-01 94.6% 57.8%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 52.0 4.20e-01 96.4% 56.5%
2w2iC00 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.60 50.0 3.23e-01 100.0% 69.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 49.0 4.27e-01 98.2% 70.2%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 47.0 3.70e-01 96.4% 68.1%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.59 41.0 3.13e-01 85.7% 29.4%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.28e-01 94.6% 64.4%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.58 46.0 3.75e-01 91.1% 88.9%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.51e-01 85.7% 56.2%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 3.74e-01 100.0% 47.4%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 3.33e-01 98.2% 34.1%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 41.0 3.88e-01 85.7% 72.4%
5jm6A02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.56 43.0 3.27e-01 85.7% 74.1%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 40.0 3.83e-01 80.4% 100.0%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 43.0 4.18e-01 92.9% 80.0%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 41.0 2.80e-01 85.7% 75.3%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 36.0 2.72e-01 71.4% 37.2%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 41.0 3.05e-01 98.2% 29.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 42.0 3.85e-01 87.5% 80.3%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 42.0 4.04e-01 94.6% 88.1%
3k0yA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.53 42.0 3.29e-01 91.1% 70.7%
3t5tB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 40.0 2.65e-01 89.3% 65.2%
4je3B00 3.10.20.720 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 42.0 3.88e-01 92.9% 74.0%
4a55A01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 39.0 2.59e-01 91.1% 31.6%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.35e-01 96.4% 89.3%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 2.73e-01 100.0% 56.1%
1xdnA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 44.0 3.25e-01 100.0% 100.0%
1bteA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 40.0 3.47e-01 89.3% 57.6%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.51 40.0 3.72e-01 91.1% 72.7%
3hhmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 39.0 3.07e-01 91.1% 69.5%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 39.0 3.22e-01 91.1% 66.4%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3399490 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.72 54.0 5.19e-01 85.7% 70.8%
3650990 274.1.1.44 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.68 58.0 4.41e-01 94.6% 58.5%
3929801 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.68 49.0 4.20e-01 85.7% 46.3%
4399538 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.68 52.0 4.25e-01 85.7% 96.4%
3218957 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.68 49.0 3.93e-01 85.7% 38.3%
3905094 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.67 53.0 4.03e-01 87.5% 50.4%
3722266 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 51.0 4.06e-01 87.5% 40.8%
3926687 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 50.0 4.04e-01 87.5% 54.2%
3490255 11.1.4.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 0.64 56.0 4.69e-01 100.0% 78.0%
3480696 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 49.0 4.31e-01 87.5% 56.5%
4003316 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.63 54.0 4.23e-01 100.0% 69.6%
3276865 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.62 53.0 4.47e-01 100.0% 61.0%
3999001 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.62 53.0 4.36e-01 98.2% 65.7%
4978692 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.62 44.0 2.86e-01 78.6% 96.7%
4680886 69.1.1.14 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 0.61 52.0 3.84e-01 100.0% 41.2%
4177322 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 52.0 3.95e-01 98.2% 59.3%
3894181 101.1.2.115 alpha arrays › HTH › HTH › winged helix domain › CDC27 0.60 42.0 2.99e-01 85.7% 24.0%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 45.0 4.18e-01 85.7% 73.3%
3625109 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.59 51.0 3.55e-01 100.0% 76.5%
3965010 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.59 46.0 4.09e-01 92.9% 91.1%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 45.0 3.97e-01 83.9% 61.4%
3821082 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 43.0 3.84e-01 87.5% 55.8%
3900025 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 46.0 4.27e-01 85.7% 92.9%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 43.0 4.32e-01 82.1% 100.0%
3236040 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.58 49.0 3.51e-01 100.0% 73.7%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 44.0 3.92e-01 85.7% 67.1%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 43.0 3.65e-01 85.7% 50.9%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 43.0 4.05e-01 85.7% 72.0%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 43.0 3.98e-01 85.7% 68.8%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 43.0 4.23e-01 85.7% 85.9%
3700507 2004.1.1.427 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.57 49.0 3.07e-01 100.0% 38.5%
3306468 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.57 49.0 3.42e-01 94.6% 51.7%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 42.0 4.22e-01 83.9% 98.3%
3734276 10.12.1.10 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC,JmjN 0.57 47.0 2.95e-01 100.0% 61.8%
3687682 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.57 47.0 3.07e-01 100.0% 81.7%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 44.0 3.94e-01 87.5% 71.8%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 43.0 4.01e-01 89.3% 67.1%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.57 42.0 3.59e-01 85.7% 52.4%
3885857 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 43.0 3.86e-01 80.4% 97.3%
3686913 101.1.2.115 alpha arrays › HTH › HTH › winged helix domain › CDC27 0.56 41.0 3.08e-01 85.7% 30.0%
3679515 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 36.0 3.86e-01 71.4% 77.8%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 42.0 4.16e-01 85.7% 98.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 44.0 4.02e-01 87.5% 81.3%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 43.0 3.65e-01 87.5% 60.4%
4602886 221.3.1.0 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.56 46.0 4.30e-01 92.9% 82.9%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.56 42.0 4.41e-01 83.9% 92.0%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.56 41.0 4.43e-01 89.3% 100.0%
2512518 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 41.0 3.55e-01 85.7% 54.5%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 45.0 4.24e-01 89.3% 88.6%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 41.0 4.06e-01 85.7% 87.3%
5023972 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.14e-01 100.0% 64.7%
4004815 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.55 44.0 3.51e-01 92.9% 56.9%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 40.0 3.99e-01 82.1% 98.3%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.55 41.0 4.34e-01 83.9% 92.0%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.54 41.0 4.09e-01 83.9% 96.6%
3180837 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.54 43.0 2.96e-01 98.2% 76.4%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 39.0 3.90e-01 82.1% 98.3%
4100709 221.1.1.21 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH 0.54 43.0 3.67e-01 91.1% 69.5%
3577792 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.53 44.0 3.58e-01 100.0% 66.7%
3397694 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 42.0 2.95e-01 100.0% 38.3%
5067362 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.53 38.0 3.23e-01 80.4% 88.3%
4019479 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.52 41.0 2.73e-01 100.0% 26.6%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.52 42.0 4.18e-01 96.4% 91.7%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.52 37.0 3.89e-01 83.9% 97.8%
3168582 3771.1.1.1 a+b two layers › Central kinetochore subunit CHL4 C-terminal domain › Central kinetochore subunit CHL4 C-terminal domain › Central kinetochore subunit CHL4 C-terminal domain › CENP-N 0.51 42.0 3.97e-01 94.6% 80.0%
4146398 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.51 45.0 3.22e-01 100.0% 67.6%
4306719 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 39.0 3.77e-01 87.5% 78.5%