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IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_100025818

Arc-Vir

IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_100025818

Identity

Kingdom:
archaea

Quality

82.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-71
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.73 57.0 5.40e-01 85.5% 71.2%
2rvqC01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.73 54.0 5.07e-01 79.0% 80.3%
2bhsB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 50.0 3.59e-01 72.6% 40.1%
4csrA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.72 54.0 4.81e-01 80.6% 71.6%
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.68 53.0 4.60e-01 85.5% 54.1%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.67 47.0 4.13e-01 79.0% 50.5%
1h3oB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.66 51.0 4.85e-01 85.5% 71.6%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.66 48.0 4.64e-01 79.0% 70.0%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 45.0 4.26e-01 74.2% 64.5%
7lv8A01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.65 49.0 4.57e-01 88.7% 64.3%
1tdjA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 46.0 3.17e-01 77.4% 31.8%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 49.0 3.90e-01 87.1% 79.4%
1eqzF00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.62 47.0 4.05e-01 85.5% 58.9%
7kpsB01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 3.37e-01 88.7% 61.5%
5w3gA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.51e-01 79.0% 47.3%
6w6jD01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.57 40.0 3.18e-01 74.2% 38.9%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 40.0 3.70e-01 93.5% 60.8%
3tw6B03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 41.0 2.53e-01 96.8% 44.6%
3thxB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.52 35.0 2.78e-01 72.6% 47.4%
1ihuA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 2.71e-01 85.5% 46.9%
1jeyB03 1.10.1600.10 Mainly Alpha › Orthogonal Bundle › Ku70; Chain: A; domain 4 › 0.50 35.0 3.03e-01 96.8% 45.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3261908 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 54.0 5.08e-01 71.0% 57.3%
5037396 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.74 51.0 3.45e-01 72.6% 20.0%
5050777 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.72 56.0 5.26e-01 88.7% 69.3%
3670131 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.72 54.0 4.20e-01 80.6% 43.7%
3526552 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.69 54.0 4.59e-01 83.9% 59.0%
3299042 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.69 56.0 4.21e-01 90.3% 44.5%
3788827 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.68 46.0 4.57e-01 71.0% 80.0%
5023752 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.67 52.0 4.89e-01 83.9% 78.7%
3263632 148.1.1.20 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone_H2A_C 0.67 56.0 4.74e-01 93.5% 95.2%
3785081 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.62 49.0 4.06e-01 93.5% 46.7%
4142118 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.62 49.0 4.04e-01 91.9% 46.4%
4028482 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.59 49.0 3.88e-01 96.8% 100.0%
4934144 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 41.0 3.87e-01 75.8% 82.5%
4558420 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.57 43.0 4.08e-01 80.6% 85.3%
3737217 103.1.1.9 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HBS1_N 0.55 42.0 4.16e-01 93.5% 80.0%
3579615 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.55 48.0 4.35e-01 100.0% 77.6%
3693575 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 45.0 4.25e-01 100.0% 95.0%