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IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_100025829

Arc-Vir

IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_100025829

Identity

Kingdom:
archaea

Quality

68.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.59 40.0 3.69e-01 94.2% 53.6%
1uswA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 42.0 2.81e-01 86.5% 50.0%
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 44.0 3.45e-01 100.0% 73.0%
2kzfA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 42.0 3.41e-01 88.5% 81.1%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 42.0 3.25e-01 86.5% 49.6%
4lyaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 36.0 2.35e-01 71.2% 78.1%
3g7nB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.61e-01 86.5% 52.9%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.52 39.0 3.00e-01 84.6% 94.1%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 46.0 2.92e-01 100.0% 88.8%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.00e-01 76.9% 39.0%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.51 39.0 3.51e-01 88.5% 84.8%
3lvtA05 2.60.40.2220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 3.10e-01 71.2% 90.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3167450 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 45.0 2.69e-01 73.1% 81.6%
3511007 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 48.0 3.68e-01 82.7% 43.3%
3538773 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 49.0 3.07e-01 90.4% 23.2%
3856932 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 50.0 3.17e-01 100.0% 40.9%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.61 45.0 3.68e-01 84.6% 90.9%
3270016 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.04e-01 96.2% 36.5%
4002369 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.59 46.0 3.88e-01 84.6% 98.9%
5038619 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.59 47.0 2.88e-01 100.0% 28.9%
3553413 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 50.0 4.22e-01 94.2% 60.0%
5029710 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 46.0 3.06e-01 96.2% 38.9%
4561895 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.57 49.0 3.28e-01 98.1% 36.7%
4295399 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.57 44.0 3.61e-01 86.5% 77.0%
3724421 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.55 42.0 3.54e-01 84.6% 84.2%
3702773 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.22e-01 96.2% 61.7%
3816372 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 44.0 2.93e-01 100.0% 34.8%
3614964 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.55 40.0 2.87e-01 82.7% 48.0%
3423460 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.54 44.0 2.67e-01 100.0% 23.0%
3597248 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 3.34e-01 84.6% 44.2%
3327738 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 36.0 2.42e-01 76.9% 18.0%
3576905 11.1.1.1009 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26432 0.53 42.0 2.50e-01 98.1% 14.5%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 40.0 2.85e-01 86.5% 47.7%
3255424 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.52 43.0 3.13e-01 98.1% 40.0%
4532642 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.50 37.0 3.47e-01 84.6% 61.4%
3708448 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 35.0 3.27e-01 78.8% 57.1%