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IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_100025840

Arc-Vir

IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_100025840

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-52
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.87 67.0 6.90e-01 95.7% 86.7%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 61.0 5.22e-01 95.7% 49.3%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.83 67.0 6.61e-01 89.4% 86.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.79 68.0 5.40e-01 97.9% 73.2%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 68.0 5.28e-01 100.0% 48.6%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 69.0 6.52e-01 100.0% 87.3%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 5.43e-01 97.9% 61.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 64.0 5.01e-01 100.0% 46.2%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 4.85e-01 89.4% 50.5%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.75 60.0 4.61e-01 89.4% 88.7%
2q0iA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.74 64.0 3.92e-01 100.0% 34.7%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 61.0 5.20e-01 95.7% 60.3%
6vhyA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.70 57.0 5.03e-01 89.4% 86.8%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.69 53.0 4.84e-01 85.1% 62.5%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 5.10e-01 100.0% 62.7%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.68 58.0 4.13e-01 100.0% 51.7%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.67 55.0 5.00e-01 100.0% 77.5%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.67 56.0 4.55e-01 100.0% 64.6%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.67 56.0 4.76e-01 100.0% 75.6%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.43e-01 85.1% 54.1%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.66 52.0 4.61e-01 100.0% 82.7%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 52.0 4.76e-01 100.0% 81.9%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 52.0 4.97e-01 100.0% 88.3%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.48e-01 100.0% 52.2%
2fmlB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.63e-01 89.4% 73.4%
3jyoA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.62 53.0 3.85e-01 100.0% 83.5%
3c4aA02 3.30.9.20 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.61 53.0 3.78e-01 100.0% 58.1%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.61 47.0 3.87e-01 89.4% 68.0%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.61 48.0 3.37e-01 95.7% 77.6%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.60 49.0 4.63e-01 89.4% 78.6%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.60 47.0 3.80e-01 89.4% 87.5%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.59 45.0 4.00e-01 97.9% 72.1%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 43.0 3.72e-01 80.9% 79.7%
2eggB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 49.0 3.55e-01 100.0% 83.3%
2kkmA01 1.20.1440.170 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like 0.58 48.0 3.66e-01 100.0% 72.8%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 46.0 4.30e-01 97.9% 95.5%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 44.0 3.60e-01 89.4% 52.6%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590835 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.95 76.0 7.80e-01 85.1% 88.9%
3590733 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.93 75.0 7.33e-01 85.1% 80.0%
3958865 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.93 78.0 7.34e-01 89.4% 76.4%
3189669 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.93 84.0 7.21e-01 100.0% 65.7%
2393452 101.43.1.1 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N 0.92 78.0 7.36e-01 91.5% 80.4%
3335282 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.91 74.0 7.00e-01 87.2% 98.2%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.91 79.0 7.47e-01 93.6% 83.6%
3960420 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.90 82.0 5.80e-01 97.9% 90.4%
3961039 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.90 73.0 7.50e-01 89.4% 93.3%
3506369 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.89 80.0 4.74e-01 100.0% 15.1%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 76.0 6.98e-01 93.6% 78.3%
3980764 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 74.0 7.59e-01 91.5% 95.6%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.89 76.0 7.48e-01 93.6% 92.0%
3962579 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 79.0 5.49e-01 97.9% 80.7%
3957333 101.43.1.2 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › Transposase_mut 0.88 74.0 6.85e-01 91.5% 74.1%
5027952 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.88 76.0 7.24e-01 95.7% 85.5%
4927588 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.88 76.0 6.44e-01 95.7% 62.7%
3641442 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.88 81.0 6.07e-01 100.0% 57.1%
3961415 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.88 73.0 4.35e-01 95.7% 14.1%
4979322 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.88 78.0 6.69e-01 95.7% 65.7%
3684956 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.88 80.0 7.08e-01 100.0% 75.4%
4978898 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 71.0 7.29e-01 89.4% 95.6%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 77.0 7.03e-01 95.7% 80.0%
3730184 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.87 79.0 7.52e-01 100.0% 89.1%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.87 75.0 6.89e-01 95.7% 78.3%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 80.0 7.58e-01 100.0% 94.5%
4105352 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.87 76.0 4.59e-01 95.7% 16.4%
3958809 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.87 75.0 7.00e-01 95.7% 79.3%
5049604 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 73.0 6.94e-01 93.6% 81.8%
4016548 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.86 77.0 7.30e-01 100.0% 89.1%
3958338 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.86 73.0 7.41e-01 93.6% 97.8%
3962597 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.86 73.0 6.52e-01 93.6% 67.7%
3692546 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.86 74.0 7.32e-01 97.9% 90.0%
3957316 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.86 73.0 6.51e-01 93.6% 67.7%
3958041 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 73.0 6.50e-01 93.6% 67.7%
5052263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 78.0 6.57e-01 100.0% 72.0%
5079851 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 71.0 6.60e-01 93.6% 75.0%
4959187 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.85 70.0 6.92e-01 95.7% 86.0%
4929599 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.85 75.0 4.65e-01 100.0% 19.2%
3589089 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.85 76.0 5.80e-01 100.0% 70.5%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.85 74.0 6.67e-01 97.9% 72.3%
4929815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 71.0 6.41e-01 93.6% 69.2%
4190132 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 76.0 7.44e-01 100.0% 96.0%
5016992 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 67.0 6.86e-01 87.2% 91.1%
3693971 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.84 75.0 7.12e-01 100.0% 90.9%
3901968 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 64.0 6.83e-01 83.0% 97.5%
3960847 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.84 75.0 5.38e-01 100.0% 57.7%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 75.0 7.14e-01 100.0% 89.1%
5047162 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 75.0 6.70e-01 100.0% 76.9%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 73.0 6.54e-01 97.9% 73.8%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 74.0 6.63e-01 100.0% 73.8%
3910504 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 68.0 6.73e-01 95.7% 86.0%
3609939 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.83 74.0 5.64e-01 100.0% 46.7%
3740014 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 74.0 6.46e-01 100.0% 91.4%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 72.0 6.32e-01 100.0% 68.6%
4031838 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.82 64.0 5.24e-01 83.0% 48.8%
3931083 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.81 68.0 6.67e-01 95.7% 88.0%
3687180 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 71.0 6.98e-01 100.0% 96.0%
3584413 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 68.0 6.10e-01 93.6% 76.9%
5029224 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 69.0 6.45e-01 97.9% 78.3%
4013698 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 64.0 5.83e-01 89.4% 73.8%
3629477 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 67.0 6.14e-01 91.5% 78.3%
4017273 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 72.0 6.84e-01 100.0% 85.5%
3988910 101.1.1.382 alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 0.80 64.0 6.54e-01 89.4% 93.3%
3255630 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 71.0 6.54e-01 100.0% 81.7%
4215069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 64.0 5.24e-01 91.5% 47.8%
3618803 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 6.08e-01 91.5% 78.3%
4053154 101.1.1.16 alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA 0.80 68.0 6.12e-01 95.7% 69.2%
3987909 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.79 70.0 5.00e-01 100.0% 63.7%
3617137 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 66.0 6.28e-01 93.6% 87.3%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 67.0 6.18e-01 95.7% 75.0%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 67.0 6.11e-01 100.0% 73.8%
4558866 101.1.1.465 alpha arrays › HTH › HTH › Three-helical HTH › DUF5338 0.78 68.0 6.72e-01 100.0% 96.0%
3621273 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.78 68.0 6.47e-01 97.9% 89.1%
5077022 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.78 67.0 5.30e-01 100.0% 49.0%
4501343 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.78 68.0 6.48e-01 95.7% 92.7%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 67.0 6.43e-01 100.0% 87.3%
5017718 2484.1.1.115 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66 0.78 66.0 4.22e-01 100.0% 20.4%
3984597 101.1.2.488 alpha arrays › HTH › HTH › winged helix domain › DDE_Tnp_IS66 0.78 67.0 5.45e-01 100.0% 73.3%
5070907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 61.0 6.28e-01 95.7% 93.3%
3987150 101.1.1.382 alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 0.77 66.0 6.55e-01 100.0% 92.0%
3487537 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 65.0 6.41e-01 100.0% 98.0%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 67.0 6.44e-01 100.0% 85.5%
3574709 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 67.0 6.24e-01 100.0% 88.3%
3793542 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 63.0 5.87e-01 93.6% 80.0%
3724068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 66.0 6.35e-01 100.0% 89.1%
4167899 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.76 64.0 6.09e-01 95.7% 80.0%
3741291 592.1.1.6 alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.76 66.0 5.55e-01 100.0% 76.2%
3969119 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.74 62.0 6.01e-01 97.9% 85.5%
3575777 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.74 64.0 6.28e-01 100.0% 94.0%
3228613 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 64.0 4.91e-01 100.0% 47.6%
5069751 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.72 59.0 3.96e-01 100.0% 23.1%
3467989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 61.0 5.73e-01 100.0% 80.0%
3450729 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 59.0 5.30e-01 100.0% 75.7%
3739094 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 57.0 5.26e-01 97.9% 81.5%
3512113 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.69 59.0 3.53e-01 100.0% 15.1%
3619546 3712.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.69 46.0 4.20e-01 70.2% 50.8%
D2 medium residues 55-153
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.88 62.0 5.12e-01 71.7% 82.4%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.88 61.0 4.67e-01 71.7% 35.4%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.87 61.0 4.45e-01 71.7% 30.1%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.86 60.0 5.88e-01 71.7% 74.3%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.86 60.0 5.80e-01 71.7% 70.6%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.83 60.0 4.88e-01 74.7% 50.6%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 57.0 4.77e-01 70.7% 49.0%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.79 61.0 5.46e-01 79.8% 94.7%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 53.0 5.32e-01 70.7% 69.0%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 53.0 5.39e-01 70.7% 70.7%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.78 55.0 4.38e-01 72.7% 43.9%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.77 55.0 5.22e-01 73.7% 98.2%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.76 53.0 4.62e-01 71.7% 51.0%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.76 54.0 4.38e-01 73.7% 40.3%
1ni3A03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.76 50.0 5.25e-01 70.7% 73.6%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 52.0 4.14e-01 71.7% 38.7%
2c0gA02 1.20.1150.12 Mainly Alpha › Up-down Bundle › Endoplasmic reticulum protein erp29 › Endoplasmic reticulum resident protein 29, C-terminal domain 0.74 46.0 4.50e-01 70.7% 58.5%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.74 51.0 5.40e-01 71.7% 80.0%
6humG01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.73 50.0 4.22e-01 70.7% 93.1%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.73 51.0 5.35e-01 71.7% 81.8%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 54.0 3.89e-01 78.8% 78.9%
6z01B03 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.64 52.0 4.42e-01 84.8% 72.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073085 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.94 66.0 5.37e-01 71.7% 43.3%
4025757 603.1.1.6 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.93 64.0 4.75e-01 70.7% 31.8%
3661727 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.91 63.0 4.83e-01 71.7% 74.6%
3770021 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.91 63.0 4.82e-01 71.7% 34.6%
3402327 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.90 63.0 5.11e-01 71.7% 52.4%
3365701 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.89 62.0 6.02e-01 71.7% 90.0%
4937862 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.89 61.0 5.90e-01 70.7% 63.6%
5041261 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.88 62.0 5.47e-01 71.7% 52.6%
3367913 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.88 62.0 5.39e-01 71.7% 50.7%
3639947 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.88 61.0 4.86e-01 71.7% 52.4%
4223425 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.88 61.0 6.04e-01 71.7% 67.6%
3550436 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.88 61.0 6.06e-01 71.7% 68.3%
4018440 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.88 61.0 6.30e-01 71.7% 74.7%
3417096 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.87 61.0 5.89e-01 71.7% 64.5%
3657123 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.87 61.0 6.27e-01 71.7% 74.7%
1171038 3755.3.1.148 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CT398_CC 0.87 60.0 4.74e-01 71.7% 37.2%
4041347 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.86 60.0 5.81e-01 71.7% 66.4%
3634896 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.86 60.0 5.69e-01 71.7% 61.7%
3917888 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.86 60.0 5.69e-01 71.7% 61.7%
5042020 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.86 60.0 6.29e-01 71.7% 78.9%
3627942 3755.4.1.1 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PI3K_P85_iSH2 0.86 60.0 4.83e-01 71.7% 40.6%
3934585 3755.3.1.465 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A 0.86 60.0 5.10e-01 71.7% 47.3%
3978513 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.85 59.0 6.55e-01 71.7% 88.7%
3297770 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.85 59.0 6.36e-01 71.7% 100.0%
3487203 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.85 58.0 6.31e-01 70.7% 82.4%
4979981 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.85 59.0 5.70e-01 71.7% 66.4%
4576287 3755.3.1.471 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Paralemmin 0.84 59.0 4.98e-01 71.7% 54.8%
3987389 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.84 59.0 3.63e-01 71.7% 14.7%
5048590 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.84 58.0 5.63e-01 71.7% 69.1%
3996264 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.83 58.0 4.74e-01 71.7% 41.8%
4016635 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.83 57.0 5.72e-01 71.7% 70.0%
4175684 3291.1.1.232 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Paralemmin 0.83 58.0 5.21e-01 71.7% 65.4%
4163282 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 57.0 4.54e-01 70.7% 45.4%
4406698 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.81 57.0 5.83e-01 71.7% 75.8%
3605450 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.81 57.0 3.79e-01 71.7% 20.3%
3497934 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.81 57.0 4.17e-01 72.7% 40.4%
4384750 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.80 56.0 5.75e-01 71.7% 75.8%
5012500 3843.1.1.6 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.80 55.0 5.95e-01 70.7% 82.4%
3484694 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 55.0 3.73e-01 70.7% 47.9%
3613932 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 55.0 5.24e-01 71.7% 61.7%
3672410 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.79 55.0 5.60e-01 71.7% 74.7%
4345287 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.78 55.0 5.49e-01 71.7% 71.0%
4247116 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.78 54.0 5.27e-01 71.7% 69.1%
3641389 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.76 53.0 3.45e-01 71.7% 17.3%
3612163 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.75 53.0 3.95e-01 72.7% 69.4%
3583684 148.1.3.11 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MT 0.74 53.0 3.82e-01 73.7% 68.5%
3412574 3291.1.1.82 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING 0.74 51.0 4.70e-01 71.7% 63.1%
3704286 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.66 52.0 5.18e-01 80.8% 81.0%
4570960 605.1.1.137 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › RRP36 0.66 52.0 4.37e-01 82.8% 78.1%
865208 3560.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 0.65 48.0 4.01e-01 77.8% 75.3%
3737517 3560.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 0.62 44.0 3.55e-01 73.7% 73.2%