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IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_100025892
Arc-VirIMGVR_UViG_3300029825_000003-3300029825-Ga0134835_100025892
Identity
- Kingdom:
- archaea
Quality
46.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-112
D2
high
residues 244-296
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.67 | 55.0 | 3.31e-01 | 88.7% | 19.7% |
| 2mm0A00 | 2.10.70.110 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.63 | 49.0 | 4.67e-01 | 86.8% | 70.3% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 51.0 | 3.11e-01 | 88.7% | 20.4% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.62 | 43.0 | 3.51e-01 | 73.6% | 52.4% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 45.0 | 3.75e-01 | 81.1% | 46.2% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 47.0 | 2.94e-01 | 83.0% | 25.3% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.62 | 43.0 | 2.47e-01 | 77.4% | 7.2% |
| 8adlB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 44.0 | 2.76e-01 | 77.4% | 19.5% |
| 4e4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.62 | 46.0 | 3.46e-01 | 83.0% | 41.8% |
| 6qm7M00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 43.0 | 2.94e-01 | 77.4% | 23.8% |
| 3pr6A00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.60 | 48.0 | 3.73e-01 | 100.0% | 39.3% |
| 6n9aB02 | 3.30.420.200 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.59 | 43.0 | 4.03e-01 | 81.1% | 68.1% |
| 4obiA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.59 | 45.0 | 3.90e-01 | 84.9% | 55.2% |
| 3r1kA03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.59 | 45.0 | 3.78e-01 | 88.7% | 47.9% |
| 3flpA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 40.0 | 2.73e-01 | 73.6% | 21.7% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.57 | 43.0 | 3.61e-01 | 84.9% | 85.9% |
| 1d06A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 46.0 | 3.67e-01 | 100.0% | 67.7% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 42.0 | 3.94e-01 | 92.5% | 65.2% |
| 1zxtA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 42.0 | 4.05e-01 | 92.5% | 70.5% |
| 1dgmA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 44.0 | 2.90e-01 | 96.2% | 19.9% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 46.0 | 3.25e-01 | 100.0% | 37.4% |
| 6muwH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 47.0 | 3.25e-01 | 100.0% | 34.7% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 44.0 | 3.51e-01 | 94.3% | 97.5% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 3.77e-01 | 92.5% | 64.2% |
| 4mjgA00 | 3.30.2030.30 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.53 | 42.0 | 3.12e-01 | 100.0% | 65.0% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.53 | 39.0 | 3.57e-01 | 79.2% | 73.2% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 41.0 | 2.81e-01 | 92.5% | 92.9% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 41.0 | 2.81e-01 | 94.3% | 93.0% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 39.0 | 3.69e-01 | 92.5% | 68.2% |
| 5cbeE00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 40.0 | 3.80e-01 | 86.8% | 75.0% |
| 1k8kD02 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 37.0 | 2.92e-01 | 83.0% | 42.7% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 38.0 | 2.36e-01 | 100.0% | 11.5% |
| 1uurA04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 39.0 | 3.04e-01 | 86.8% | 36.8% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.51 | 39.0 | 3.45e-01 | 94.3% | 78.7% |
| 1jlcB03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.51 | 42.0 | 3.18e-01 | 94.3% | 85.7% |
| 3l20A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 37.0 | 2.77e-01 | 83.0% | 84.4% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4001894 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.77 | 54.0 | 2.98e-01 | 75.5% | 5.0% |
| 4371091 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.76 | 53.0 | 3.19e-01 | 73.6% | 27.2% |
| 4998603 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.74 | 64.0 | 5.75e-01 | 98.1% | 86.7% |
| 4030008 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.72 | 53.0 | 3.26e-01 | 79.2% | 20.6% |
| 4944026 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 60.0 | 5.70e-01 | 96.2% | 85.9% |
| 2429383 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.70 | 51.0 | 3.09e-01 | 77.4% | 27.2% |
| 3848511 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.70 | 53.0 | 2.86e-01 | 81.1% | 6.6% |
| 3244845 | 5.1.4.137 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nbas_N | 0.69 | 52.0 | 2.92e-01 | 81.1% | 13.0% |
| 3617341 | 5.1.4.320 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 | 0.69 | 52.0 | 3.04e-01 | 81.1% | 16.2% |
| 3188942 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.67 | 51.0 | 2.94e-01 | 83.0% | 18.0% |
| 3996624 | 5.1.5.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd | 0.67 | 50.0 | 3.01e-01 | 81.1% | 16.3% |
| 5043752 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.67 | 50.0 | 3.22e-01 | 81.1% | 22.9% |
| 4028603 | 5.1.4.402 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30552 | 0.66 | 51.0 | 2.97e-01 | 83.0% | 30.7% |
| 3785876 | 5.1.4.262 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 | 0.66 | 52.0 | 3.08e-01 | 84.9% | 15.7% |
| 3575495 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.66 | 49.0 | 3.75e-01 | 81.1% | 57.6% |
| 3229101 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.65 | 47.0 | 4.32e-01 | 79.2% | 98.6% |
| 4563304 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.65 | 49.0 | 3.05e-01 | 83.0% | 29.6% |
| 2184 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.65 | 52.0 | 3.22e-01 | 88.7% | 81.5% |
| 4671862 | 10.1.1.41 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 | 0.64 | 44.0 | 2.94e-01 | 71.7% | 47.1% |
| 3934966 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.63 | 46.0 | 3.03e-01 | 79.2% | 30.5% |
| 3882163 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 48.0 | 3.14e-01 | 84.9% | 52.2% |
| 4030767 | 3504.1.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 | 0.63 | 44.0 | 3.40e-01 | 73.6% | 95.0% |
| 5022797 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.61 | 46.0 | 3.15e-01 | 86.8% | 20.9% |
| 4018116 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 51.0 | 4.07e-01 | 100.0% | 44.9% |
| 3397074 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 43.0 | 3.38e-01 | 81.1% | 36.3% |
| 3829077 | 5.1.4.151 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 | 0.60 | 45.0 | 2.60e-01 | 83.0% | 22.3% |
| 3827375 | 207.1.1.96 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 | 0.59 | 45.0 | 2.85e-01 | 86.8% | 17.1% |
| 3245986 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.59 | 50.0 | 3.36e-01 | 100.0% | 46.1% |
| 3244738 | 223.2.1.16 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 | 0.58 | 46.0 | 4.04e-01 | 100.0% | 80.0% |
| 3512316 | 5.1.5.69 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nbas_N | 0.58 | 47.0 | 2.88e-01 | 92.5% | 26.1% |
| 4083184 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.57 | 41.0 | 3.42e-01 | 79.2% | 54.0% |
| 3948528 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 47.0 | 3.75e-01 | 94.3% | 86.4% |
| 665 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.56 | 42.0 | 3.91e-01 | 92.5% | 64.2% |
| 3249214 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 40.0 | 3.25e-01 | 81.1% | 39.2% |
| 3514476 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.56 | 49.0 | 3.42e-01 | 100.0% | 53.1% |
| 3912274 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.55 | 41.0 | 3.80e-01 | 92.5% | 61.4% |
| 3874808 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.55 | 46.0 | 3.09e-01 | 100.0% | 29.8% |
| 3364428 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.55 | 38.0 | 2.59e-01 | 75.5% | 20.9% |
| 3880422 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.55 | 41.0 | 3.77e-01 | 92.5% | 63.2% |
| 3979396 | 3454.1.1.4 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › HofP | 0.55 | 38.0 | 3.41e-01 | 75.5% | 91.3% |
| 5050158 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 44.0 | 3.21e-01 | 96.2% | 48.2% |
| 3786425 | 241.6.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc | 0.54 | 39.0 | 3.08e-01 | 81.1% | 42.3% |
| 3894506 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.54 | 40.0 | 3.70e-01 | 92.5% | 61.4% |
| 3856611 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.54 | 40.0 | 3.82e-01 | 92.5% | 68.3% |
| 3472026 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.53 | 47.0 | 3.63e-01 | 100.0% | 63.3% |
| 3833288 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.53 | 44.0 | 2.70e-01 | 98.1% | 25.8% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.53 | 41.0 | 3.19e-01 | 92.5% | 95.7% |
| 3992808 | 5.1.4.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 | 0.52 | 38.0 | 2.40e-01 | 79.2% | 19.0% |
| 4011809 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.51 | 42.0 | 2.54e-01 | 96.2% | 40.7% |
| 4544219 | 2003.1.5.151 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 | 0.51 | 41.0 | 2.76e-01 | 100.0% | 70.0% |
| 4023351 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 38.0 | 2.87e-01 | 84.9% | 50.0% |
| 3493294 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 41.0 | 3.04e-01 | 92.5% | 51.0% |
| 3570692 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.51 | 44.0 | 3.44e-01 | 98.1% | 46.1% |