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IMGVR_UViG_3300029825_000030-3300029825-Ga0134835_100103831
Arc-VirIMGVR_UViG_3300029825_000030-3300029825-Ga0134835_100103831
Identity
- Kingdom:
- archaea
Quality
80.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-53
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g3wA00 | 3.10.640.10 | Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain | 0.65 | 54.0 | 3.62e-01 | 97.7% | 26.3% |
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.64 | 52.0 | 3.61e-01 | 100.0% | 33.1% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.64 | 53.0 | 3.75e-01 | 100.0% | 49.3% |
| 2ot9A01 | 3.10.640.10 | Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain | 0.62 | 51.0 | 3.51e-01 | 100.0% | 26.7% |
| 4xs5B00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.61 | 48.0 | 3.68e-01 | 95.3% | 42.1% |
| 4yxqB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.58 | 47.0 | 2.99e-01 | 100.0% | 24.4% |
| 4py5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 46.0 | 3.11e-01 | 97.7% | 65.6% |
| 5hc8A00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.57 | 46.0 | 3.01e-01 | 100.0% | 84.3% |
| 6sshA01 | 3.40.50.11210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP | 0.56 | 47.0 | 3.19e-01 | 100.0% | 67.6% |
| 1z4mA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 41.0 | 3.05e-01 | 90.7% | 50.4% |
| 2vg0A00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.53 | 43.0 | 2.84e-01 | 100.0% | 87.2% |
| 1q8iA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 36.0 | 2.50e-01 | 76.7% | 45.9% |
| 2vy9A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.52 | 43.0 | 3.28e-01 | 97.7% | 39.5% |
| 1f75A00 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.52 | 42.0 | 2.85e-01 | 100.0% | 84.3% |
| 7paxA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.52 | 42.0 | 2.72e-01 | 100.0% | 74.7% |
| 2qubA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 41.0 | 2.60e-01 | 100.0% | 32.8% |
| 1gm5A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 2.81e-01 | 100.0% | 73.9% |
| 2p0sB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 36.0 | 2.82e-01 | 76.7% | 36.0% |
| 1jl3A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 42.0 | 3.10e-01 | 100.0% | 68.6% |
| 1ym3A00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.52 | 38.0 | 2.58e-01 | 86.0% | 32.1% |
| 3wqlA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.51 | 40.0 | 2.67e-01 | 100.0% | 77.0% |
| 1yz4B01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 38.0 | 2.88e-01 | 97.7% | 88.9% |
| 2rauA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 41.0 | 2.51e-01 | 97.7% | 49.4% |
| 1egaA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 40.0 | 3.18e-01 | 100.0% | 68.9% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5037430 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.63 | 50.0 | 3.84e-01 | 100.0% | 45.0% |
| 3435075 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.63 | 52.0 | 3.42e-01 | 100.0% | 34.4% |
| 3941904 | 2006.1.4.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN7 | 0.61 | 53.0 | 3.83e-01 | 97.7% | 40.8% |
| 3581564 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.60 | 43.0 | 3.74e-01 | 81.4% | 100.0% |
| 3423030 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.60 | 47.0 | 3.25e-01 | 95.3% | 28.2% |
| 3906173 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.59 | 46.0 | 3.04e-01 | 95.3% | 41.6% |
| 2057083 | 207.1.1.102 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 | 0.58 | 41.0 | 2.35e-01 | 95.3% | 5.8% |
| 4964370 | 2008.1.1.230 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7527 | 0.58 | 46.0 | 3.03e-01 | 100.0% | 27.2% |
| 3710833 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 47.0 | 3.17e-01 | 97.7% | 59.5% |
| 3407355 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.56 | 45.0 | 3.19e-01 | 100.0% | 43.5% |
| 5027442 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.55 | 45.0 | 4.15e-01 | 100.0% | 78.3% |
| 4943673 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.54 | 44.0 | 2.85e-01 | 100.0% | 78.8% |
| 3209208 | 2003.1.4.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › TPP_enzyme_M | 0.54 | 44.0 | 3.01e-01 | 100.0% | 47.0% |
| 4226084 | 7524.1.1.3 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › LuxC | 0.53 | 44.0 | 2.54e-01 | 100.0% | 22.3% |
| 5029812 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.53 | 43.0 | 2.87e-01 | 100.0% | 84.8% |
| 3477317 | 7534.1.1.0 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase | 0.53 | 42.0 | 2.87e-01 | 100.0% | 73.9% |
| 3718983 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.53 | 43.0 | 2.95e-01 | 100.0% | 68.9% |
| 3260179 | 2484.1.1.104 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 | 0.53 | 41.0 | 3.31e-01 | 95.3% | 42.0% |
| 5037812 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.53 | 42.0 | 2.81e-01 | 100.0% | 84.3% |
| 4932253 | 2008.1.1.100 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 | 0.53 | 43.0 | 3.12e-01 | 97.7% | 40.0% |
| 3659491 | 207.1.1.102 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 | 0.52 | 40.0 | 2.38e-01 | 95.3% | 16.2% |
| 4929543 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 2.93e-01 | 90.7% | 43.8% |
| 5059450 | 247.1.1.12 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 | 0.52 | 43.0 | 2.83e-01 | 97.7% | 42.2% |
| 4014795 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.52 | 41.0 | 2.61e-01 | 100.0% | 19.7% |
| 3992246 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.51 | 41.0 | 3.53e-01 | 95.3% | 82.7% |
| 4954201 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.51 | 40.0 | 2.48e-01 | 97.7% | 23.4% |
| 3686002 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.51 | 38.0 | 2.52e-01 | 97.7% | 40.0% |
| 3939312 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.50 | 37.0 | 2.57e-01 | 81.4% | 40.6% |
| 4932109 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.50 | 40.0 | 3.55e-01 | 100.0% | 58.6% |
| 2602293 | 7534.1.1.0 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase | 0.50 | 39.0 | 2.53e-01 | 100.0% | 65.4% |