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IMGVR_UViG_3300029825_000030-3300029825-Ga0134835_100103848
Arc-VirIMGVR_UViG_3300029825_000030-3300029825-Ga0134835_100103848
Identity
- Kingdom:
- archaea
Quality
74.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 48-131
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mcfA00 | 3.40.50.11630 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 38.0 | 3.24e-01 | 92.9% | 39.9% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 28.0 | 3.16e-01 | 95.2% | 67.2% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 41.0 | 3.54e-01 | 84.5% | 79.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031616 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.57 | 37.0 | 4.36e-01 | 83.3% | 100.0% |
| 4096635 | 2484.1.1.308 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TNP-like_RNaseH_N, TNP-like_RNaseH_C | 0.54 | 41.0 | 2.85e-01 | 84.5% | 73.9% |
| 4127839 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 31.0 | 3.28e-01 | 79.8% | 66.7% |
| 4008916 | 223.1.1.103 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7, PF30448 | 0.51 | 44.0 | 2.96e-01 | 100.0% | 55.0% |
| 4593431 | 223.1.1.67 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7 | 0.51 | 44.0 | 3.37e-01 | 100.0% | 94.3% |
| 3824081 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.50 | 39.0 | 2.69e-01 | 88.1% | 35.4% |
| 4015093 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.50 | 36.0 | 3.09e-01 | 75.0% | 85.9% |
D2
medium
residues 6-39
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t05A02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.69 | 53.0 | 4.02e-01 | 97.1% | 34.0% |
| 2k5iA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.68 | 50.0 | 3.99e-01 | 91.2% | 57.1% |
| 4ac9C04 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.66 | 52.0 | 4.18e-01 | 100.0% | 43.8% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 50.0 | 3.50e-01 | 97.1% | 24.8% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.63 | 48.0 | 3.98e-01 | 97.1% | 46.8% |
| 4pmwA02 | 2.40.50.700 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 46.0 | 3.80e-01 | 91.2% | 92.3% |
| 1m1gB03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 48.0 | 4.18e-01 | 97.1% | 57.1% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 47.0 | 3.79e-01 | 97.1% | 41.4% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 50.0 | 4.17e-01 | 91.2% | 67.2% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.62 | 48.0 | 3.43e-01 | 97.1% | 28.4% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.62 | 47.0 | 3.64e-01 | 94.1% | 36.0% |
| 1vqzA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.60 | 47.0 | 3.67e-01 | 97.1% | 37.5% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 46.0 | 3.99e-01 | 94.1% | 58.1% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.59 | 47.0 | 3.60e-01 | 94.1% | 37.9% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.59 | 47.0 | 3.86e-01 | 97.1% | 44.2% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 48.0 | 3.02e-01 | 100.0% | 23.6% |
| 2rk9B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 40.0 | 2.84e-01 | 79.4% | 19.7% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 46.0 | 3.85e-01 | 97.1% | 55.7% |
| 1xg9A02 | 3.10.25.20 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › | 0.57 | 42.0 | 3.75e-01 | 94.1% | 66.1% |
| 2cg7A02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.56 | 41.0 | 4.01e-01 | 97.1% | 75.0% |
| 6hlxA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.56 | 46.0 | 2.99e-01 | 94.1% | 47.3% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 44.0 | 3.15e-01 | 100.0% | 39.3% |
| 1kvzA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.55 | 46.0 | 3.33e-01 | 100.0% | 51.4% |
| 2qggA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.54 | 38.0 | 3.22e-01 | 97.1% | 50.6% |
| 2v5gA00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.53 | 42.0 | 3.03e-01 | 97.1% | 27.5% |
| 1xi7A00 | 4.10.40.20 | Few Secondary Structures › Irregular › Omega-AgatoxinV › | 0.53 | 40.0 | 3.83e-01 | 97.1% | 85.1% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.51 | 39.0 | 3.00e-01 | 100.0% | 33.3% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003597 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.65 | 50.0 | 3.72e-01 | 97.1% | 33.3% |
| 1213522 | 1.1.13.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_B-dom | 0.65 | 48.0 | 3.78e-01 | 91.2% | 37.9% |
| 3501287 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 53.0 | 5.16e-01 | 100.0% | 90.0% |
| 3300051 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.63 | 47.0 | 3.89e-01 | 94.1% | 45.3% |
| 4027263 | 4.1.1.104 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3 | 0.62 | 49.0 | 3.51e-01 | 97.1% | 30.0% |
| 4020648 | 2485.1.1.13 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N | 0.62 | 51.0 | 3.67e-01 | 97.1% | 73.3% |
| 5015084 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.62 | 47.0 | 4.12e-01 | 97.1% | 51.7% |
| 3893506 | 391.1.2.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › fn1 | 0.62 | 45.0 | 4.42e-01 | 97.1% | 73.3% |
| 3518993 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.61 | 47.0 | 4.69e-01 | 97.1% | 88.6% |
| 3468853 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 46.0 | 4.64e-01 | 91.2% | 88.6% |
| 3999808 | 389.2.1.3 ↗ | few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors › TIL_2 | 0.61 | 43.0 | 4.10e-01 | 79.4% | 62.2% |
| 3410597 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.60 | 49.0 | 2.73e-01 | 94.1% | 6.3% |
| 3443400 | 4.1.1.299 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 | 0.60 | 48.0 | 3.95e-01 | 97.1% | 84.0% |
| 4028997 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 52.0 | 3.86e-01 | 97.1% | 36.7% |
| 4583465 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.59 | 45.0 | 4.16e-01 | 94.1% | 64.0% |
| 4026200 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.59 | 45.0 | 3.72e-01 | 91.2% | 44.3% |
| 3315096 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 41.0 | 4.14e-01 | 85.3% | 94.3% |
| 4927866 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.57 | 45.0 | 2.73e-01 | 94.1% | 13.3% |
| 5002490 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.57 | 44.0 | 2.57e-01 | 100.0% | 11.8% |
| 5037870 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.57 | 43.0 | 3.57e-01 | 100.0% | 42.7% |
| 1558719 | 12.6.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M | 0.57 | 46.0 | 3.39e-01 | 100.0% | 33.3% |
| 4982958 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.57 | 44.0 | 3.39e-01 | 100.0% | 36.0% |
| 4938177 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.56 | 45.0 | 3.07e-01 | 97.1% | 26.2% |
| 3895924 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.56 | 46.0 | 3.10e-01 | 100.0% | 41.4% |
| 4131948 | 220.1.1.186 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CAYP2 | 0.56 | 44.0 | 3.35e-01 | 97.1% | 37.0% |
| 3717426 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.56 | 45.0 | 2.61e-01 | 100.0% | 21.8% |
| 3419351 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 38.0 | 3.48e-01 | 94.1% | 56.9% |
| 2559738 | 79.1.1.9 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer | 0.55 | 38.0 | 2.32e-01 | 100.0% | 9.5% |
| 3733713 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 37.0 | 2.98e-01 | 76.5% | 30.0% |
| 4890873 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.54 | 44.0 | 3.06e-01 | 97.1% | 26.5% |
| 3535499 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 37.0 | 2.94e-01 | 94.1% | 30.0% |
| 3886139 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.54 | 39.0 | 3.52e-01 | 100.0% | 61.5% |
| 3612106 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 37.0 | 3.22e-01 | 94.1% | 48.0% |
| 4034091 | 4325.1.1.7 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 | 0.53 | 39.0 | 3.61e-01 | 91.2% | 68.0% |
| 4955420 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 40.0 | 2.47e-01 | 94.1% | 13.3% |
| 4923629 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.52 | 45.0 | 3.01e-01 | 97.1% | 24.2% |
| 4031854 | 2004.1.1.68 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IstB_IS21 | 0.52 | 36.0 | 2.37e-01 | 100.0% | 15.7% |
| 3413411 | 109.21.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C | 0.51 | 39.0 | 2.22e-01 | 94.1% | 6.7% |