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IMGVR_UViG_3300029825_000175-3300029825-Ga0134835_10078968
Arc-VirIMGVR_UViG_3300029825_000175-3300029825-Ga0134835_10078968
Identity
- Kingdom:
- archaea
Quality
76.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-92
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ultB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.82 | 46.0 | 2.85e-01 | 75.6% | 11.8% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.63 | 56.0 | 5.07e-01 | 98.9% | 87.6% |
| 3dktA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.61 | 51.0 | 5.09e-01 | 93.3% | 89.5% |
| 2dm9A00 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.60 | 48.0 | 4.43e-01 | 95.6% | 66.9% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.59 | 51.0 | 5.12e-01 | 100.0% | 97.9% |
| 1z6aA01 | 3.40.50.10810 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain | 0.58 | 52.0 | 4.02e-01 | 100.0% | 59.2% |
| 3g2mA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 43.0 | 3.53e-01 | 93.3% | 43.6% |
| 4efaE02 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.56 | 48.0 | 4.28e-01 | 95.6% | 70.5% |
| 2f5tX01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.55 | 49.0 | 4.25e-01 | 98.9% | 67.6% |
| 2o57A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 3.38e-01 | 97.8% | 43.6% |
| 6g62A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 40.0 | 3.69e-01 | 77.8% | 66.1% |
| 3ahcA02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.54 | 46.0 | 3.61e-01 | 100.0% | 89.4% |
| 6vq6I01 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.54 | 46.0 | 4.39e-01 | 96.7% | 82.4% |
| 3tosA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 48.0 | 3.47e-01 | 100.0% | 78.5% |
| 3c3kA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 45.0 | 3.99e-01 | 96.7% | 84.1% |
| 3ua3A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 47.0 | 3.81e-01 | 100.0% | 67.1% |
| 2dlxA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 37.0 | 3.50e-01 | 75.6% | 70.8% |
| 2cmgA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 46.0 | 3.48e-01 | 98.9% | 46.9% |
| 1zq9A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 46.0 | 3.67e-01 | 100.0% | 91.7% |
| 2dj0A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 38.0 | 3.44e-01 | 80.0% | 71.4% |
| 2b78A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 45.0 | 3.48e-01 | 100.0% | 53.4% |
| 1f3lA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 45.0 | 3.87e-01 | 98.9% | 78.3% |
| 3mydA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.51 | 38.0 | 3.26e-01 | 78.9% | 72.9% |
| 4rhaA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.51 | 40.0 | 3.59e-01 | 87.8% | 79.4% |
| 2diyA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 36.0 | 3.44e-01 | 76.7% | 65.8% |
| 3lmkA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 43.0 | 3.61e-01 | 98.9% | 69.2% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4125320 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.73 | 57.0 | 5.91e-01 | 98.9% | 88.2% |
| 4201753 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.72 | 59.0 | 5.17e-01 | 98.9% | 60.8% |
| 3090875 | 2485.3.1.14 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like | 0.71 | 61.0 | 4.21e-01 | 95.6% | 50.8% |
| 4097188 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.70 | 55.0 | 5.14e-01 | 98.9% | 68.2% |
| 3387325 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.69 | 50.0 | 4.05e-01 | 98.9% | 39.4% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.69 | 60.0 | 4.37e-01 | 96.7% | 57.3% |
| 3967169 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.69 | 53.0 | 4.77e-01 | 98.9% | 59.2% |
| 3838428 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.69 | 52.0 | 4.73e-01 | 100.0% | 60.0% |
| 4122989 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.65 | 50.0 | 4.10e-01 | 100.0% | 44.8% |
| 4079005 | 298.4.1.6 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › T3SS_SCTL | 0.64 | 51.0 | 4.65e-01 | 98.9% | 63.2% |
| 4559262 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.63 | 50.0 | 4.67e-01 | 98.9% | 69.1% |
| 5011908 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.63 | 56.0 | 4.13e-01 | 98.9% | 50.8% |
| 3971880 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.62 | 55.0 | 4.67e-01 | 100.0% | 76.0% |
| 3587520 | 301.1.1.6 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › MRM3-like_sub_bind | 0.61 | 43.0 | 4.21e-01 | 83.3% | 67.0% |
| 3782191 | 2003.1.5.26 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 | 0.61 | 54.0 | 3.55e-01 | 100.0% | 37.0% |
| 4412841 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.60 | 49.0 | 4.31e-01 | 98.9% | 60.0% |
| 3614766 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 51.0 | 3.79e-01 | 95.6% | 63.7% |
| 4038524 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.59 | 48.0 | 4.40e-01 | 95.6% | 66.7% |
| 5028114 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.59 | 52.0 | 4.47e-01 | 98.9% | 69.7% |
| 3990047 | 301.10.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › YueI-like › YueI-like › DUF1694 | 0.59 | 47.0 | 4.52e-01 | 95.6% | 74.3% |
| 3377563 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.59 | 47.0 | 3.90e-01 | 86.7% | 59.4% |
| 3306022 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.59 | 43.0 | 4.31e-01 | 77.8% | 73.7% |
| 4927032 | 2004.1.1.176 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp | 0.59 | 52.0 | 4.18e-01 | 100.0% | 99.4% |
| 11367 | 2485.3.1.6 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 | 0.59 | 51.0 | 5.12e-01 | 100.0% | 97.9% |
| 5074001 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.57 | 50.0 | 4.29e-01 | 98.9% | 70.3% |
| 5065195 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.57 | 51.0 | 4.44e-01 | 100.0% | 71.7% |
| 3480633 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 49.0 | 4.00e-01 | 100.0% | 98.3% |
| 4992548 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.56 | 50.0 | 4.45e-01 | 100.0% | 72.3% |
| 5037030 | 7528.1.1.3 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III | 0.55 | 47.0 | 4.39e-01 | 95.6% | 75.5% |
| 5051703 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.55 | 49.0 | 3.48e-01 | 98.9% | 63.3% |
| 3593767 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.55 | 48.0 | 4.27e-01 | 98.9% | 70.0% |
| 4024080 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.55 | 48.0 | 3.24e-01 | 98.9% | 86.9% |
| 4961939 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.54 | 47.0 | 4.17e-01 | 98.9% | 72.6% |
| 4409477 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.54 | 38.0 | 4.07e-01 | 85.6% | 89.2% |
| 4680322 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.54 | 37.0 | 4.02e-01 | 83.3% | 86.7% |
| 3939892 | 2485.1.1.87 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N | 0.53 | 40.0 | 3.57e-01 | 78.9% | 66.4% |
| 4032608 | 2004.1.1.225 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MFD_D3 | 0.53 | 43.0 | 4.18e-01 | 100.0% | 81.9% |
| 4485600 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.52 | 44.0 | 3.42e-01 | 97.8% | 41.5% |
| 5031345 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.51 | 42.0 | 3.83e-01 | 93.3% | 89.2% |
| 3474625 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 37.0 | 3.42e-01 | 78.9% | 68.0% |
| 3471652 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 45.0 | 3.36e-01 | 100.0% | 63.7% |
| 3529174 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.51 | 43.0 | 2.87e-01 | 100.0% | 81.4% |
| 4959577 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.51 | 40.0 | 4.06e-01 | 85.6% | 88.6% |
| 3605699 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.51 | 45.0 | 3.32e-01 | 100.0% | 94.8% |