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IMGVR_UViG_3300029825_000558-3300029825-Ga0134835_10013479
Arc-VirIMGVR_UViG_3300029825_000558-3300029825-Ga0134835_10013479
Identity
- Kingdom:
- archaea
Quality
85.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-106
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4y66F01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 48.0 | 5.59e-01 | 96.9% | 98.5% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 49.0 | 5.36e-01 | 98.0% | 88.5% |
| 1a0pA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.63 | 43.0 | 4.45e-01 | 89.8% | 75.8% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 42.0 | 4.59e-01 | 81.6% | 88.5% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.60 | 44.0 | 4.61e-01 | 95.9% | 85.6% |
| 4m3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 43.0 | 3.70e-01 | 100.0% | 46.5% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.59 | 46.0 | 4.81e-01 | 96.9% | 93.2% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.59 | 42.0 | 4.35e-01 | 96.9% | 79.6% |
| 3g88A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 40.0 | 3.03e-01 | 93.9% | 28.5% |
| 1el6A02 | 2.20.20.20 | Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain | 0.59 | 30.0 | 4.00e-01 | 82.7% | 100.0% |
| 3igrA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 42.0 | 3.47e-01 | 100.0% | 41.0% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 35.0 | 3.47e-01 | 76.5% | 55.7% |
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.57 | 45.0 | 4.49e-01 | 100.0% | 83.2% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 41.0 | 3.48e-01 | 100.0% | 43.8% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 38.0 | 2.91e-01 | 93.9% | 28.2% |
| 3dluA00 | 3.30.56.30 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit | 0.55 | 37.0 | 3.84e-01 | 74.5% | 72.6% |
| 1qzzA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 39.0 | 3.37e-01 | 96.9% | 44.4% |
| 1u3dA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 43.0 | 3.92e-01 | 90.8% | 64.9% |
| 5f2kB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 42.0 | 3.35e-01 | 100.0% | 40.2% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 31.0 | 3.36e-01 | 90.8% | 68.8% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 41.0 | 2.91e-01 | 84.7% | 45.2% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 30.0 | 3.30e-01 | 89.8% | 69.6% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 41.0 | 3.32e-01 | 86.7% | 72.6% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.52 | 30.0 | 3.52e-01 | 75.5% | 82.4% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 45.0 | 3.90e-01 | 93.9% | 74.8% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 32.0 | 3.45e-01 | 92.9% | 75.0% |
| 4zosB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 33.0 | 3.33e-01 | 74.5% | 66.0% |
| 2jlmA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 43.0 | 3.59e-01 | 94.9% | 92.1% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.51 | 37.0 | 3.53e-01 | 76.5% | 65.2% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 30.0 | 3.03e-01 | 75.5% | 57.1% |
| 2yx1A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 33.0 | 2.80e-01 | 88.8% | 36.7% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 33.0 | 3.54e-01 | 79.6% | 77.4% |
| 4jxqA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 43.0 | 3.50e-01 | 93.9% | 87.0% |
| 2zw5A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 42.0 | 3.49e-01 | 91.8% | 90.8% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 30.0 | 2.98e-01 | 75.5% | 54.3% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4376064 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 53.0 | 6.19e-01 | 95.9% | 98.6% |
| 3595354 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 48.0 | 4.27e-01 | 93.9% | 46.4% |
| 4052741 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 54.0 | 5.88e-01 | 99.0% | 93.8% |
| 4944116 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 44.0 | 4.48e-01 | 91.8% | 62.1% |
| 4156356 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.73 | 50.0 | 5.23e-01 | 98.0% | 77.8% |
| 4991879 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 59.0 | 5.76e-01 | 100.0% | 81.9% |
| 4601678 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 52.0 | 5.52e-01 | 99.0% | 88.2% |
| 4028116 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.70 | 50.0 | 5.32e-01 | 100.0% | 85.9% |
| 4990919 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 56.0 | 5.62e-01 | 100.0% | 85.0% |
| 4522308 | 101.1.2.654 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPA | 0.69 | 49.0 | 5.31e-01 | 91.8% | 91.3% |
| 3794506 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.67 | 47.0 | 3.65e-01 | 94.9% | 34.6% |
| 3529864 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.66 | 43.0 | 5.00e-01 | 94.9% | 100.0% |
| 4991685 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 55.0 | 5.34e-01 | 100.0% | 80.9% |
| 2061059 | 101.1.2.131 ↗ | alpha arrays › HTH › HTH › winged helix domain › RctB_central | 0.65 | 55.0 | 4.53e-01 | 93.9% | 67.8% |
| 4978486 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.63 | 44.0 | 3.98e-01 | 99.0% | 53.8% |
| 4929238 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.60 | 31.0 | 3.49e-01 | 74.5% | 62.7% |
| 3989268 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.59 | 43.0 | 3.55e-01 | 100.0% | 41.7% |
| 135381 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.59 | 40.0 | 3.03e-01 | 93.9% | 28.5% |
| None | — | 0.59 | 39.0 | 3.00e-01 | 93.9% | 28.5% | |
| 4585912 | 101.1.2.603 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 | 0.59 | 51.0 | 3.39e-01 | 93.9% | 26.7% |
| 4940409 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.58 | 35.0 | 3.84e-01 | 73.5% | 73.8% |
| None | — | 0.58 | 39.0 | 3.00e-01 | 93.9% | 29.1% | |
| 3310077 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.58 | 39.0 | 2.95e-01 | 93.9% | 27.3% |
| 4019966 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 43.0 | 2.97e-01 | 96.9% | 22.6% |
| 4171355 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.57 | 39.0 | 2.89e-01 | 93.9% | 26.2% |
| None | — | 0.57 | 39.0 | 2.99e-01 | 93.9% | 29.6% | |
| 4372405 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.57 | 38.0 | 2.91e-01 | 92.9% | 28.5% |
| 5080315 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 38.0 | 3.36e-01 | 96.9% | 44.8% |
| 4484429 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.56 | 39.0 | 2.94e-01 | 96.9% | 28.2% |
| 4437131 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.56 | 38.0 | 3.01e-01 | 93.9% | 32.4% |
| 4292276 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.56 | 38.0 | 2.95e-01 | 93.9% | 30.9% |
| 4189238 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.56 | 37.0 | 2.95e-01 | 93.9% | 31.4% |
| 4964155 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.55 | 50.0 | 4.43e-01 | 99.0% | 78.6% |
| 3224075 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 34.0 | 2.57e-01 | 79.6% | 25.7% |
| 3563063 | 320.4.1.0 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain | 0.53 | 38.0 | 3.41e-01 | 100.0% | 52.9% |
| 3605297 | 306.10.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 | 0.52 | 38.0 | 3.54e-01 | 99.0% | 60.8% |
| 3178531 | 304.47.1.6 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › PF27810 | 0.52 | 34.0 | 3.35e-01 | 75.5% | 60.9% |
| 4011808 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.51 | 36.0 | 3.43e-01 | 74.5% | 83.3% |
| 3719372 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 39.0 | 2.59e-01 | 81.6% | 23.4% |
| 5071790 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.51 | 43.0 | 3.54e-01 | 91.8% | 92.6% |
| 4950505 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.51 | 42.0 | 3.37e-01 | 90.8% | 86.7% |
| 3720255 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.50 | 36.0 | 3.30e-01 | 74.5% | 91.0% |
| 3205638 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.50 | 41.0 | 2.90e-01 | 92.9% | 90.1% |
| 4150895 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 35.0 | 2.55e-01 | 85.7% | 25.9% |
| 4987784 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.50 | 35.0 | 2.53e-01 | 85.7% | 25.5% |