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IMGVR_UViG_3300029847_000221-3300029847-Ga0245281_1010432

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300029847_000221-3300029847-Ga0245281_1010432 ↗
Kingdom:: archaea

Quality

91.6 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-96

PDB

Domain cluster: representative

CATH (25)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vtnC00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.74	65.0	5.74e-01	100.0%	88.2%
3pvlA03	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.71	62.0	5.24e-01	100.0%	65.3%
3cuqA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.68	52.0	4.94e-01	82.6%	90.1%
2rq1A00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.66	56.0	4.88e-01	100.0%	62.4%
7kypB01	1.10.3470.10	Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC	0.64	54.0	3.70e-01	98.6%	59.2%
2gsvA00	6.10.140.40	Special › Helix non-globular › Helix Hairpins ›	0.64	48.0	4.92e-01	82.6%	95.5%
1b0bA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.63	47.0	3.81e-01	81.2%	94.3%
2pbiA02	1.10.1240.60	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.60	52.0	4.58e-01	100.0%	65.3%
1ldjA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.58	47.0	4.01e-01	89.9%	63.5%
1p6rA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	48.0	4.62e-01	97.1%	89.0%
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.55	45.0	3.85e-01	88.4%	89.0%
1x0tA01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.55	36.0	3.80e-01	75.4%	75.4%
1e8yA03	1.25.40.70	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK)	0.55	38.0	2.81e-01	89.9%	26.9%
4fcyA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.54	40.0	3.95e-01	97.1%	73.1%
3eslA02	1.25.40.930	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	38.0	3.26e-01	85.5%	44.5%
7crnA01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.53	47.0	3.20e-01	100.0%	86.0%
1lb3A00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.53	46.0	3.51e-01	100.0%	50.9%
2qwoB00	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.53	40.0	3.66e-01	82.6%	90.2%
3ihuA02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.52	43.0	3.61e-01	100.0%	83.5%
1he8A03	1.25.40.70	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK)	0.52	37.0	3.23e-01	89.9%	47.7%
2es9A00	1.20.1290.30	Mainly Alpha › Up-down Bundle › AhpD-like ›	0.52	42.0	3.75e-01	100.0%	63.0%
2go7A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.52	38.0	3.87e-01	81.2%	83.6%
3fkjA02	1.10.10.2240	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	34.0	3.53e-01	84.1%	75.0%
2fi1A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.51	37.0	3.89e-01	85.5%	85.9%
1b5lA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.50	45.0	3.46e-01	100.0%	62.5%

ECOD (48)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4381449	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.99	94.0	9.37e-01	98.6%	97.1%
5048198	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.96	92.0	8.87e-01	100.0%	92.0%
5040456	101.7.1.0 ↗	alpha arrays › HTH › DEK-C › DEK-C	0.96	91.0	8.82e-01	100.0%	92.0%
4284771	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.95	91.0	8.78e-01	100.0%	92.0%
4508795	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.95	90.0	8.53e-01	100.0%	86.3%
4672609	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.95	90.0	8.74e-01	100.0%	92.0%
5010390	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.94	89.0	8.21e-01	100.0%	81.2%
4179857	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.94	89.0	8.38e-01	100.0%	86.3%
4947782	101.1.17.47 ↗	alpha arrays › HTH › HTH › FF domain › tRNA-synt_1c	0.94	88.0	8.84e-01	100.0%	98.6%
4437630	3705.1.1.0 ↗	alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS)	0.94	86.0	8.59e-01	97.1%	95.7%
5031505	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.93	88.0	7.93e-01	100.0%	77.8%
5066348	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.93	88.0	8.31e-01	100.0%	86.3%
4325038	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.93	87.0	8.05e-01	100.0%	81.2%
4937164	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.93	85.0	8.51e-01	100.0%	95.7%
5033981	3705.1.1.0 ↗	alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS)	0.93	88.0	8.28e-01	100.0%	86.3%
4936844	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.92	86.0	8.38e-01	100.0%	92.0%
5035650	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.92	86.0	8.62e-01	100.0%	98.6%
5028188	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.92	86.0	8.56e-01	100.0%	98.6%
4946735	101.1.17.47 ↗	alpha arrays › HTH › HTH › FF domain › tRNA-synt_1c	0.91	84.0	8.41e-01	100.0%	97.1%
4252854	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.91	86.0	8.31e-01	100.0%	93.3%
5078179	173.1.1.0 ↗	alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like	0.91	85.0	8.26e-01	100.0%	92.0%
5031685	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.91	81.0	8.07e-01	100.0%	94.3%
5062437	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.89	83.0	8.09e-01	100.0%	92.0%
5025142	6035.1.1.0 ↗	alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain	0.88	81.0	7.69e-01	100.0%	87.5%
5032990	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.87	76.0	7.59e-01	100.0%	92.9%
4107520	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.87	80.0	7.83e-01	100.0%	93.3%
4932388	101.1.6.0 ↗	alpha arrays › HTH › HTH › TrpR	0.87	78.0	7.62e-01	100.0%	90.7%
4281410	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.86	75.0	7.73e-01	98.6%	100.0%
5068621	101.7.1.0 ↗	alpha arrays › HTH › DEK-C › DEK-C	0.85	76.0	7.45e-01	100.0%	90.7%
5008229	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.83	76.0	7.41e-01	100.0%	94.7%
4480957	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.80	69.0	6.88e-01	95.7%	92.9%
4596379	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.80	70.0	7.04e-01	100.0%	94.3%
4323920	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.79	62.0	6.41e-01	100.0%	90.8%
3216068	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.76	68.0	6.53e-01	100.0%	98.7%
3570216	197.1.1.1 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M	0.72	63.0	5.32e-01	100.0%	64.2%
3995159	197.1.1.1 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M	0.71	61.0	5.25e-01	100.0%	66.1%
5041402	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.71	53.0	5.51e-01	81.2%	89.2%
5053497	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.70	56.0	5.91e-01	89.9%	98.3%
4963932	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.68	59.0	5.58e-01	100.0%	96.5%
3533409	197.1.1.0 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like	0.67	57.0	4.93e-01	100.0%	66.1%
4473504	304.136.1.3 ↗	a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SGIII	0.67	49.0	4.56e-01	88.4%	61.1%
3477799	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.66	59.0	5.70e-01	100.0%	87.2%
3787825	101.1.2.539 ↗	alpha arrays › HTH › HTH › winged helix domain › WH_GDS1	0.64	53.0	4.38e-01	94.2%	66.2%
5022018	4973.1.1.0 ↗	alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core	0.64	43.0	4.31e-01	81.2%	68.6%
3480129	6092.1.1.1 ↗	alpha bundles › Helical extension domain in Regulator of G-protein signaling 9 › Helical extension domain in Regulator of G-protein signaling 9 › Helical extension domain in Regulator of G-protein signaling 9 › RGS_DHEX	0.59	51.0	4.63e-01	100.0%	71.6%
3245498	6092.1.1.1 ↗	alpha bundles › Helical extension domain in Regulator of G-protein signaling 9 › Helical extension domain in Regulator of G-protein signaling 9 › Helical extension domain in Regulator of G-protein signaling 9 › RGS_DHEX	0.59	50.0	4.42e-01	100.0%	64.8%
2771713	7579.1.1.10 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Thioesterase	0.58	47.0	3.25e-01	92.8%	73.5%
10305	7516.1.1.25 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB	0.52	43.0	2.73e-01	97.1%	88.9%

D2 high residues 122-190_341-422

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00749.28 best	tRNA-synt_1c	29.8	4.20e-07	56.3%	25.8%
PF00749.28	tRNA-synt_1c	79.6	2.90e-22	48.3%	21.7%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3aiiA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.93	91.0	6.89e-01	100.0%	95.7%
4h3sA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.91	88.0	6.41e-01	100.0%	87.5%
4g6zA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.82	79.0	6.11e-01	100.0%	98.3%
1pg2A01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.77	74.0	5.46e-01	100.0%	93.9%
1wkbA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.77	67.0	4.64e-01	90.7%	92.6%
2x0kA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.77	55.0	5.08e-01	72.8%	91.4%
3op1A01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.74	53.0	4.92e-01	72.8%	90.8%
1iq0A01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.74	70.0	5.07e-01	99.3%	98.4%
4a91A01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.68	61.0	6.18e-01	94.0%	96.7%
3p0hB01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.59	54.0	4.28e-01	99.3%	80.3%
2qs7A00	3.40.1260.10	Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like	0.56	30.0	3.18e-01	97.4%	55.1%
4l6wB01	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.54	31.0	2.93e-01	71.5%	48.9%

ECOD (88)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4260563	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.98	96.0	7.19e-01	100.0%	95.6%
4218545	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.97	94.0	6.93e-01	99.3%	93.0%
4089572	239.1.1.17 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c	0.97	94.0	6.65e-01	100.0%	91.7%
4626249	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.96	94.0	6.64e-01	100.0%	90.4%
4947783	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.96	94.0	6.97e-01	100.0%	94.5%
4940443	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.96	94.0	6.53e-01	100.0%	74.8%
4422421	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.96	92.0	6.85e-01	98.7%	93.8%
4079544	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.95	93.0	6.86e-01	100.0%	93.0%
4050304	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.94	92.0	6.70e-01	100.0%	89.9%
4365844	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.94	91.0	8.41e-01	100.0%	82.8%
3195557	239.1.1.0 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like	0.84	46.0	3.51e-01	86.1%	25.9%
None	—		0.84	81.0	5.38e-01	100.0%	65.8%
None	—		0.83	81.0	5.48e-01	100.0%	70.8%
4165889	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.83	81.0	5.47e-01	100.0%	70.8%
4338062	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.83	80.0	5.37e-01	100.0%	67.6%
None	—		0.83	80.0	5.36e-01	100.0%	66.2%
4674396	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.83	80.0	6.00e-01	100.0%	99.1%
None	—		0.83	80.0	5.35e-01	100.0%	68.0%
4062902	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.83	80.0	5.39e-01	100.0%	74.2%
4025786	101.8.1.5 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c	0.83	80.0	5.30e-01	100.0%	63.7%
None	—		0.83	80.0	5.39e-01	100.0%	74.3%
None	—		0.83	80.0	5.40e-01	100.0%	66.4%
None	—		0.83	80.0	5.39e-01	100.0%	69.1%
3742058	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.83	80.0	5.34e-01	100.0%	66.0%
None	—		0.82	80.0	5.32e-01	100.0%	67.6%
None	—		0.82	80.0	5.31e-01	100.0%	66.0%
None	—		0.82	80.0	5.33e-01	100.0%	66.6%
4662099	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.82	80.0	5.37e-01	100.0%	75.5%
3507842	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.82	80.0	5.82e-01	100.0%	93.1%
4437869	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.82	79.0	5.34e-01	100.0%	68.1%
4619918	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.82	80.0	5.35e-01	100.0%	73.3%
4281438	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.82	73.0	5.77e-01	92.1%	98.6%
None	—		0.82	79.0	5.29e-01	100.0%	75.2%
None	—		0.82	79.0	5.38e-01	100.0%	67.6%
3431108	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.82	80.0	5.25e-01	100.0%	62.7%
4417998	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.82	79.0	6.09e-01	99.3%	98.6%
None	—		0.82	79.0	5.27e-01	100.0%	65.9%
None	—		0.82	79.0	5.36e-01	100.0%	66.4%
None	—		0.82	79.0	5.32e-01	100.0%	67.5%
4446314	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.82	79.0	5.23e-01	100.0%	68.2%
3648718	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.82	78.0	5.77e-01	98.7%	99.1%
4084568	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.82	79.0	5.89e-01	100.0%	93.9%
3621280	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.82	79.0	5.24e-01	100.0%	64.8%
3483507	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.82	72.0	5.33e-01	90.7%	96.7%
None	—		0.82	79.0	5.27e-01	100.0%	67.0%
4348581	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.82	79.0	5.30e-01	100.0%	66.0%
4477990	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.82	72.0	5.37e-01	90.7%	98.5%
4391812	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.81	79.0	5.24e-01	100.0%	65.1%
4199049	101.8.1.5 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c	0.81	78.0	5.42e-01	100.0%	72.0%
4054700	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.81	72.0	5.71e-01	91.4%	98.9%
None	—		0.81	78.0	5.41e-01	100.0%	71.4%
None	—		0.81	78.0	5.27e-01	100.0%	67.5%
4536750	101.8.1.5 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c	0.81	79.0	5.42e-01	100.0%	70.0%
4109031	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.81	78.0	5.38e-01	100.0%	69.3%
None	—		0.81	78.0	5.41e-01	100.0%	71.9%
4088162	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.81	78.0	5.21e-01	100.0%	64.2%
4088260	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.81	78.0	5.75e-01	100.0%	88.7%
None	—		0.81	78.0	5.30e-01	100.0%	67.3%
4192177	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.81	78.0	5.47e-01	100.0%	66.0%
4629297	8002.1.1.1 ↗	alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c	0.81	71.0	5.38e-01	90.1%	100.0%
3926117	101.8.1.5 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c	0.81	78.0	5.23e-01	100.0%	67.5%
4659912	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.81	78.0	5.35e-01	100.0%	63.9%
4667949	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.81	72.0	5.65e-01	92.1%	98.9%
4480232	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.80	76.0	5.82e-01	97.4%	98.7%
4632887	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.80	75.0	5.68e-01	97.4%	99.4%
4161471	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.80	77.0	5.88e-01	98.7%	94.0%
4200628	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.80	70.0	5.29e-01	90.7%	97.5%
4248349	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.80	71.0	5.32e-01	92.1%	92.3%
4247133	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.80	71.0	5.17e-01	92.1%	91.5%
4056782	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.80	77.0	5.08e-01	100.0%	61.7%
None	—		0.79	76.0	5.14e-01	100.0%	66.9%
4645734	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.79	69.0	5.22e-01	90.1%	100.0%
4217211	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.79	76.0	5.28e-01	100.0%	64.3%
None	—		0.79	76.0	5.16e-01	100.0%	66.4%
4233833	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.79	76.0	5.16e-01	100.0%	65.3%
None	—		0.78	75.0	5.14e-01	100.0%	66.2%
4609913	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.75	67.0	5.21e-01	92.7%	98.3%
4602688	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.75	64.0	5.01e-01	89.4%	98.3%
3973680	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.75	67.0	5.22e-01	93.4%	98.3%
4076539	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.74	67.0	5.14e-01	93.4%	95.4%
3978282	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.74	66.0	5.28e-01	92.7%	98.9%
4340548	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.71	66.0	5.10e-01	96.0%	97.7%
4300539	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.69	65.0	5.13e-01	98.7%	88.4%
4229262	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.68	57.0	4.58e-01	86.1%	99.6%
4529252	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.66	63.0	4.82e-01	99.3%	95.4%
3552020	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.54	47.0	3.84e-01	88.7%	90.8%
3599195	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.54	47.0	3.88e-01	88.7%	95.0%
4924741	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.51	43.0	4.14e-01	87.4%	78.1%

D3 high residues 194-300

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00749.28 best	tRNA-synt_1c	69.2	4.30e-19	100.0%	36.3%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3aiiA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.98	96.0	6.57e-01	100.0%	35.4%
4h3sA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.95	92.0	6.08e-01	100.0%	32.6%
1qruA04	3.90.800.10	Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3	0.95	87.0	8.69e-01	95.3%	99.1%
6b1pA02	3.90.800.10	Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3	0.68	51.0	5.64e-01	97.2%	94.4%
1nzjA02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.68	56.0	5.13e-01	99.1%	68.1%
1g59A03	3.90.800.10	Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3	0.66	59.0	5.75e-01	97.2%	88.8%
3afhA02	3.90.800.10	Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3	0.61	49.0	5.03e-01	97.2%	87.5%
4griA02	3.90.800.10	Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3	0.59	53.0	5.09e-01	97.2%	89.4%
2ja2A02	3.90.800.10	Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3	0.58	53.0	5.09e-01	97.2%	89.2%
6b1zA02	3.90.800.10	Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3	0.58	52.0	4.86e-01	97.2%	89.9%
1t6sB02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	25.0	2.96e-01	73.8%	57.1%
2g80A02	1.10.720.60	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.51	34.0	3.80e-01	100.0%	91.0%
4g6zA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	41.0	3.00e-01	100.0%	31.8%

ECOD (58)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4079544	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.99	97.0	6.49e-01	100.0%	33.9%
4947783	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.99	97.0	6.50e-01	100.0%	33.8%
4626249	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.99	96.0	6.22e-01	100.0%	28.9%
4089572	239.1.1.17 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c	0.99	96.0	6.21e-01	100.0%	28.8%
4970422	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.98	96.0	7.38e-01	100.0%	53.2%
5054969	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.98	95.0	7.35e-01	100.0%	53.2%
4422421	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.98	95.0	6.43e-01	100.0%	33.8%
4940443	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.98	95.0	6.08e-01	100.0%	26.9%
4946736	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.98	95.0	6.87e-01	100.0%	43.2%
4218545	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.97	95.0	6.34e-01	100.0%	33.3%
4260563	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.97	95.0	6.42e-01	100.0%	34.0%
3945215	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.95	92.0	7.78e-01	100.0%	70.6%
4161471	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.95	92.0	6.33e-01	100.0%	37.7%
2495177	8002.1.1.1 ↗	alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c	0.95	78.0	6.90e-01	84.1%	64.8%
4945212	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.95	91.0	6.75e-01	100.0%	48.1%
3293922	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.94	91.0	7.52e-01	100.0%	64.1%
3599195	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.94	91.0	6.69e-01	100.0%	45.4%
3552020	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.94	90.0	6.59e-01	100.0%	43.6%
3516835	8002.1.1.1 ↗	alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c	0.94	85.0	8.60e-01	93.5%	97.1%
2488186	8002.1.1.1 ↗	alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c	0.94	74.0	7.93e-01	81.3%	100.0%
4050304	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.91	87.0	5.86e-01	100.0%	34.2%
3619373	2005.1.1.6 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c,tRNA_synt_1c_R2	0.90	84.0	6.00e-01	100.0%	38.5%
5066349	8002.1.1.1 ↗	alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c	0.84	80.0	7.91e-01	99.1%	98.2%
3973680	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.69	58.0	4.14e-01	100.0%	32.4%
None	—		0.67	62.0	3.97e-01	100.0%	23.4%
4298869	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.67	59.0	3.76e-01	100.0%	21.5%
None	—		0.66	62.0	3.90e-01	100.0%	23.4%
None	—		0.65	57.0	3.67e-01	100.0%	22.0%
4667949	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.65	61.0	4.38e-01	100.0%	38.2%
4348581	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.64	60.0	3.81e-01	100.0%	23.4%
None	—		0.64	59.0	3.79e-01	100.0%	22.8%
4056782	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.64	59.0	3.71e-01	100.0%	21.7%
4619918	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.63	58.0	3.70e-01	100.0%	22.1%
3483507	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.63	58.0	4.03e-01	100.0%	33.1%
4446314	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.63	58.0	3.68e-01	100.0%	21.6%
None	—		0.63	58.0	3.70e-01	100.0%	23.1%
4437869	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.62	58.0	3.69e-01	100.0%	23.3%
None	—		0.62	58.0	3.69e-01	100.0%	24.1%
None	—		0.62	58.0	3.70e-01	100.0%	25.0%
None	—		0.62	58.0	3.77e-01	100.0%	24.9%
3431108	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.62	58.0	3.64e-01	100.0%	21.7%
4229262	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.62	58.0	4.26e-01	100.0%	43.5%
4662099	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.62	58.0	3.69e-01	100.0%	23.8%
None	—		0.62	58.0	3.76e-01	100.0%	25.1%
4084568	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.62	58.0	3.98e-01	100.0%	32.7%
None	—		0.62	58.0	3.68e-01	100.0%	24.9%
4025786	101.8.1.5 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c	0.61	56.0	3.60e-01	100.0%	21.8%
4199049	101.8.1.5 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1c	0.61	57.0	3.72e-01	100.0%	25.2%
None	—		0.61	57.0	3.61e-01	100.0%	22.2%
4629297	8002.1.1.1 ↗	alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c	0.61	57.0	3.99e-01	100.0%	36.1%
None	—		0.61	56.0	3.60e-01	100.0%	22.8%
4632887	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.60	56.0	3.92e-01	100.0%	35.0%
4088162	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.60	56.0	3.54e-01	100.0%	22.4%
3958400	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.60	56.0	4.58e-01	100.0%	59.5%
None	—		0.60	56.0	3.60e-01	100.0%	23.4%
None	—		0.60	56.0	3.59e-01	100.0%	24.0%
None	—		0.58	55.0	3.50e-01	100.0%	23.4%
4088260	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.58	53.0	3.62e-01	100.0%	30.1%

D4 high residues 427-578

PDB

Domain cluster: rep: Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00246__D332-454_506-525

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03950.24 best	tRNA-synt_1c_C	55.0	1.10e-14	57.9%	82.4%
PF20974.3	tRNA-synt_1c_C2	39.1	1.50e-09	33.6%	100.0%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3aiiA02	2.40.240.100	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P ›	0.98	39.0	6.47e-01	100.0%	95.3%
1qtqA02	2.40.240.10	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P	0.66	36.0	4.79e-01	100.0%	93.3%
4p2bA04	2.40.240.10	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P	0.65	34.0	4.69e-01	99.3%	97.5%
2hz7A04	2.40.240.10	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P	0.62	34.0	4.45e-01	100.0%	91.2%
1dfuP00	2.40.240.10	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P	0.60	36.0	4.56e-01	99.3%	97.9%
3cp0A00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	21.0	3.16e-01	100.0%	85.7%

ECOD (24)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3195557	239.1.1.0 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like	0.88	85.0	6.39e-01	100.0%	70.0%
4507630	239.1.1.0 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like	0.86	82.0	6.28e-01	100.0%	71.0%
4940443	2005.1.1.5 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c	0.77	40.0	2.83e-01	81.6%	20.0%
None	—		0.65	39.0	4.11e-01	81.6%	66.4%
4168875	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.64	37.0	4.68e-01	100.0%	92.6%
4139867	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.63	38.0	4.86e-01	100.0%	96.8%
4564499	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.63	37.0	4.80e-01	100.0%	98.9%
5022325	239.1.1.15 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf	0.62	31.0	3.85e-01	73.0%	75.0%
4285300	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.62	37.0	4.69e-01	98.7%	95.8%
4145938	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.62	37.0	4.59e-01	100.0%	92.0%
4265687	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.62	37.0	4.73e-01	100.0%	97.9%
4681723	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.62	37.0	4.64e-01	100.0%	95.8%
4433128	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.62	37.0	4.65e-01	98.7%	95.8%
4197939	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.61	36.0	4.62e-01	99.3%	95.8%
4118502	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.61	37.0	4.65e-01	100.0%	96.8%
3253514	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.61	38.0	4.67e-01	100.0%	95.0%
4069101	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.61	37.0	4.56e-01	100.0%	93.0%
4672167	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.61	36.0	4.53e-01	100.0%	94.7%
4452931	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.59	37.0	4.47e-01	100.0%	91.4%
4323001	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.59	37.0	4.53e-01	100.0%	95.0%
4197235	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.59	36.0	4.45e-01	100.0%	96.8%
4554927	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.59	37.0	4.52e-01	100.0%	96.0%
4188763	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.56	36.0	4.31e-01	100.0%	94.3%
3711708	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	28.0	3.71e-01	88.2%	97.6%