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IMGVR_UViG_3300029852_000010-3300029852-Ga0245291_1004495
Arc-VirIMGVR_UViG_3300029852_000010-3300029852-Ga0245291_1004495
Identity
- Kingdom:
- archaea
Quality
84.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-51
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kuqA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.72 | 57.0 | 3.91e-01 | 92.0% | 26.0% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.60 | 53.0 | 3.62e-01 | 100.0% | 89.2% |
| 4nnzA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.60 | 47.0 | 3.16e-01 | 86.0% | 43.5% |
| 2oasA03 | 3.40.1080.20 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Acetyl-CoA hydrolase/transferase C-terminal domain | 0.59 | 42.0 | 3.12e-01 | 78.0% | 78.5% |
| 3vdpA01 | 1.10.8.420 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecR Domain 1 | 0.58 | 41.0 | 4.15e-01 | 88.0% | 76.9% |
| 1cy5A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 43.0 | 3.61e-01 | 86.0% | 63.0% |
| 4b8cJ01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.55 | 39.0 | 2.66e-01 | 96.0% | 19.6% |
| 1u3dA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 45.0 | 3.33e-01 | 100.0% | 37.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079072 | 101.1.11.44 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › VAPB_antitox | 0.74 | 53.0 | 4.59e-01 | 76.0% | 50.7% |
| 4933529 | 101.1.11.44 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › VAPB_antitox | 0.67 | 44.0 | 3.97e-01 | 78.0% | 48.6% |
| 4612882 | 102.1.1.40 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RecR_HhH | 0.59 | 42.0 | 4.39e-01 | 86.0% | 86.7% |
| 4202384 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.58 | 49.0 | 3.93e-01 | 100.0% | 48.4% |
| None | — | 0.57 | 41.0 | 4.09e-01 | 88.0% | 74.1% | |
| 3902183 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 50.0 | 2.93e-01 | 100.0% | 12.8% |