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IMGVR_UViG_3300029852_000010-3300029852-Ga0245291_1004498

Arc-Vir

IMGVR_UViG_3300029852_000010-3300029852-Ga0245291_1004498

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-50
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.87 75.0 6.99e-01 96.0% 100.0%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.85 75.0 7.07e-01 100.0% 86.7%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 72.0 6.90e-01 98.0% 86.2%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 69.0 5.72e-01 100.0% 52.9%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 72.0 5.72e-01 100.0% 49.0%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.83 69.0 6.46e-01 92.0% 86.9%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.83 68.0 6.95e-01 96.0% 95.7%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.83 73.0 4.98e-01 100.0% 33.5%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.82 72.0 5.96e-01 100.0% 69.3%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.81 72.0 4.86e-01 100.0% 71.3%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.81 68.0 5.04e-01 100.0% 36.0%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.81 69.0 5.78e-01 100.0% 56.7%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.81 70.0 6.41e-01 100.0% 95.5%
1o9gA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 61.0 6.42e-01 86.0% 97.7%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.80 67.0 5.96e-01 100.0% 66.2%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.80 68.0 5.51e-01 100.0% 49.5%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.80 68.0 5.82e-01 100.0% 60.0%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 69.0 6.30e-01 100.0% 74.6%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 69.0 5.44e-01 98.0% 81.6%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 69.0 5.67e-01 100.0% 60.4%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.78 68.0 6.27e-01 100.0% 78.5%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.78 62.0 5.33e-01 92.0% 54.1%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.77 65.0 6.28e-01 100.0% 86.4%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 65.0 6.29e-01 100.0% 94.8%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 61.0 4.32e-01 90.0% 80.8%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 66.0 5.89e-01 100.0% 69.0%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.74 62.0 5.32e-01 100.0% 57.8%
3sllA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.74 57.0 5.44e-01 88.0% 100.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.74 63.0 5.26e-01 100.0% 60.0%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.74 65.0 6.27e-01 100.0% 93.0%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.73 66.0 5.27e-01 100.0% 66.7%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 61.0 5.00e-01 96.0% 49.5%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.73 63.0 5.30e-01 100.0% 58.0%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 57.0 4.56e-01 96.0% 42.5%
1qguB04 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.72 54.0 4.63e-01 86.0% 49.4%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.71 62.0 5.67e-01 100.0% 77.3%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.70 60.0 5.34e-01 100.0% 65.8%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.70 58.0 5.25e-01 100.0% 71.6%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 61.0 5.77e-01 100.0% 88.3%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.69 58.0 3.63e-01 96.0% 17.8%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.69 60.0 5.05e-01 100.0% 61.2%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.69 57.0 4.80e-01 96.0% 53.8%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 55.0 4.36e-01 96.0% 45.3%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.69 58.0 4.58e-01 100.0% 49.1%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.68 55.0 4.28e-01 94.0% 37.9%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.68 58.0 4.39e-01 98.0% 86.5%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.66 53.0 3.76e-01 96.0% 28.2%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.64 43.0 4.04e-01 72.0% 55.6%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.64 52.0 4.92e-01 98.0% 84.1%
3q1pA01 6.10.250.1120 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 44.0 4.83e-01 82.0% 100.0%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.63 52.0 4.53e-01 100.0% 58.8%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.63 49.0 5.08e-01 100.0% 100.0%
1dd3A01 1.20.5.710 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin 0.62 46.0 4.55e-01 92.0% 77.2%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.62 41.0 4.27e-01 76.0% 74.5%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.61 51.0 3.62e-01 100.0% 36.4%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.54e-01 88.0% 88.5%
1v4gA01 6.10.140.800 Special › Helix non-globular › Helix Hairpins › 0.57 45.0 4.12e-01 90.0% 73.9%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974230 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.90 82.0 6.29e-01 100.0% 48.6%
3219646 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.89 77.0 7.45e-01 100.0% 85.5%
3989094 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.89 75.0 6.64e-01 100.0% 65.7%
4674 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.86 76.0 6.95e-01 98.0% 96.9%
3249654 604.5.1.32 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TMEM120A-B 0.85 76.0 6.48e-01 100.0% 63.7%
3967123 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.84 74.0 6.34e-01 100.0% 63.7%
3611289 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.84 74.0 5.29e-01 100.0% 34.5%
3884649 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.84 75.0 6.01e-01 100.0% 56.8%
5059993 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.83 72.0 5.78e-01 98.0% 50.5%
5006188 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.81 70.0 6.62e-01 100.0% 85.0%
3781752 192.15.1.46 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Ribophorin_II_C 0.81 69.0 5.25e-01 96.0% 43.5%
3435543 192.15.1.77 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 0.81 70.0 5.40e-01 100.0% 44.3%
3410128 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.81 68.0 6.37e-01 100.0% 78.5%
3713201 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.81 69.0 4.98e-01 98.0% 100.0%
3554395 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.81 68.0 4.15e-01 100.0% 15.7%
3720488 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.80 71.0 5.22e-01 100.0% 39.2%
4935676 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.80 68.0 5.35e-01 100.0% 46.4%
3386800 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.80 69.0 6.57e-01 100.0% 85.0%
4329615 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 69.0 6.21e-01 100.0% 72.9%
4929363 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.80 69.0 5.22e-01 96.0% 55.7%
4040184 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.79 65.0 6.50e-01 94.0% 100.0%
4979981 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.79 68.0 5.31e-01 100.0% 49.1%
3972992 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.78 67.0 6.21e-01 100.0% 95.4%
3195087 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.77 67.0 5.21e-01 100.0% 47.3%
4955780 3939.1.1.387 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › DUF4349 0.77 66.0 6.05e-01 96.0% 100.0%
4950292 150.5.1.126 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › HisKA 0.77 67.0 5.70e-01 100.0% 60.2%
2814930 150.1.1.14 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like 0.77 65.0 5.62e-01 100.0% 65.1%
3719543 109.4.1.2185 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30307 0.77 67.0 3.59e-01 100.0% 4.7%
3775580 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.75 67.0 5.84e-01 100.0% 66.7%
3588172 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.75 65.0 4.70e-01 100.0% 34.0%
4950607 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.75 64.0 4.38e-01 100.0% 26.3%
4446039 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.75 63.0 5.61e-01 94.0% 87.1%
3550436 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.74 59.0 4.78e-01 100.0% 45.2%
4115372 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.74 64.0 5.02e-01 100.0% 56.4%
3504474 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.73 59.0 4.85e-01 100.0% 47.0%
4097040 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.73 61.0 5.01e-01 100.0% 51.0%
3513582 192.8.1.36 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.72 64.0 4.94e-01 100.0% 46.4%
3397793 616.1.1.2 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS 0.72 60.0 5.88e-01 100.0% 90.9%
5048590 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.71 61.0 4.84e-01 100.0% 56.4%
1948638 4970.1.1.1 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.71 61.0 5.98e-01 100.0% 100.0%
3225484 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 60.0 5.48e-01 100.0% 71.4%
4375453 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.70 57.0 5.20e-01 100.0% 82.7%
4419515 150.1.1.59 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Coat_F 0.64 53.0 4.64e-01 96.0% 61.3%
3468069 6055.1.1.0 extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC 0.63 49.0 4.94e-01 96.0% 96.0%