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IMGVR_UViG_3300029857_000365-3300029857-Ga0245297_100013915
Arc-VirIMGVR_UViG_3300029857_000365-3300029857-Ga0245297_100013915
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 267-455
Domain cluster:
rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17289.9 best | Terminase_6C | 30.7 | 4.10e-07 | 84.7% | 66.5% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.79 | 73.0 | 6.83e-01 | 96.3% | 96.9% |
| 8dkrB01 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.77 | 70.0 | 6.53e-01 | 95.2% | 100.0% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.74 | 51.0 | 5.99e-01 | 88.4% | 99.2% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.68 | 49.0 | 5.61e-01 | 89.9% | 100.0% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.64 | 46.0 | 4.26e-01 | 71.4% | 88.3% |
| 1f2dA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 32.0 | 4.14e-01 | 91.0% | 87.3% |
| 3czcA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 30.0 | 3.93e-01 | 92.6% | 100.0% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 44.0 | 4.19e-01 | 80.4% | 92.1% |
| 6hcdD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 36.0 | 4.22e-01 | 86.2% | 91.9% |
| 2bgwB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 36.0 | 4.23e-01 | 98.4% | 93.1% |
| 3pdiA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 36.0 | 3.93e-01 | 90.5% | 81.8% |
| 7wgrA03 | 3.40.50.11610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain | 0.52 | 34.0 | 4.04e-01 | 93.1% | 96.2% |
| 4xfjB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 40.0 | 4.16e-01 | 79.9% | 100.0% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.52 | 38.0 | 4.16e-01 | 91.5% | 94.1% |
| 3kljA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 28.0 | 3.49e-01 | 97.4% | 87.3% |
| 1vc1A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.51 | 30.0 | 3.85e-01 | 81.5% | 99.1% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 23.0 | 3.05e-01 | 87.8% | 76.8% |
| 5ck3F00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 32.0 | 3.53e-01 | 100.0% | 77.6% |
| 4hd5A01 | 2.60.40.3760 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 24.0 | 3.11e-01 | 85.7% | 79.4% |
| 2xryA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 34.0 | 3.77e-01 | 94.7% | 85.8% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974990 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.90 | 80.0 | 8.38e-01 | 100.0% | 98.9% |
| 3964372 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.87 | 80.0 | 7.92e-01 | 100.0% | 92.3% |
| 4954544 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.79 | 74.0 | 7.40e-01 | 97.4% | 96.8% |
| 5041440 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.78 | 73.0 | 7.04e-01 | 98.4% | 97.1% |
| 5080207 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.78 | 73.0 | 7.21e-01 | 98.9% | 97.5% |
| 4975081 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 60.0 | 6.63e-01 | 91.5% | 100.0% |
| 3979705 | 2484.1.1.248 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GpA_nuclease | 0.75 | 70.0 | 6.21e-01 | 100.0% | 98.1% |
| 4038287 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.74 | 52.0 | 6.00e-01 | 91.0% | 99.3% |
| 3166064 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 67.0 | 6.30e-01 | 97.4% | 98.6% |
| 4278305 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.72 | 51.0 | 5.89e-01 | 89.9% | 100.0% |
| 4306325 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.71 | 52.0 | 5.79e-01 | 90.5% | 94.0% |
| 4171807 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.71 | 52.0 | 5.60e-01 | 91.0% | 87.5% |
| 3712058 | 2484.1.1.72 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF | 0.71 | 52.0 | 5.64e-01 | 88.4% | 88.1% |
| 4108976 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.71 | 51.0 | 5.61e-01 | 91.0% | 90.3% |
| 3597605 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 52.0 | 5.52e-01 | 89.4% | 84.1% |
| 3401772 | 2484.1.1.72 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF | 0.70 | 54.0 | 5.37e-01 | 90.5% | 75.5% |
| 3964520 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.69 | 49.0 | 5.47e-01 | 90.5% | 93.1% |
| 4118739 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.66 | 48.0 | 5.42e-01 | 91.0% | 97.9% |
| 3237131 | 2484.1.1.74 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF | 0.65 | 52.0 | 5.62e-01 | 90.5% | 97.5% |
| 3958888 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 37.0 | 4.11e-01 | 80.4% | 76.1% |
| 3713746 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.59 | 36.0 | 4.30e-01 | 84.7% | 89.6% |
| 3827180 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.58 | 37.0 | 3.99e-01 | 94.7% | 73.3% |
| 3585258 | 300.1.1.9 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › MIT_C | 0.58 | 38.0 | 4.11e-01 | 90.5% | 78.1% |
| 4971715 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.56 | 36.0 | 4.18e-01 | 86.8% | 90.8% |
| 3468786 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.56 | 42.0 | 3.77e-01 | 77.2% | 78.5% |
| 4999083 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.56 | 39.0 | 4.38e-01 | 95.2% | 92.4% |
| 11164 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.56 | 43.0 | 4.17e-01 | 80.4% | 91.2% |
| 5075843 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.55 | 32.0 | 3.94e-01 | 90.5% | 87.8% |
| 4302576 | 7522.1.1.3 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C | 0.55 | 36.0 | 4.22e-01 | 94.7% | 93.3% |
| 3953883 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 35.0 | 4.08e-01 | 88.4% | 89.6% |
| 3474702 | 2006.1.4.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PRORP | 0.54 | 37.0 | 3.75e-01 | 83.1% | 67.9% |
| 4082717 | 7522.1.1.3 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C | 0.54 | 39.0 | 4.29e-01 | 96.3% | 91.3% |
| 3942107 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.54 | 39.0 | 4.02e-01 | 77.2% | 78.9% |
| None | — | 0.54 | 39.0 | 3.79e-01 | 95.8% | 65.7% | |
| 3929140 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 34.0 | 3.80e-01 | 97.9% | 80.7% |
| 3453547 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.54 | 41.0 | 3.63e-01 | 78.8% | 76.4% |
| 4664422 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 35.0 | 4.01e-01 | 88.9% | 90.4% |
| 3466857 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.53 | 41.0 | 3.98e-01 | 86.8% | 70.7% |
| 4458074 | 7516.1.1.102 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2, Glyco_trans_2_3 | 0.51 | 43.0 | 3.11e-01 | 89.9% | 73.5% |
| 1175743 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.51 | 43.0 | 4.29e-01 | 88.4% | 90.9% |
| 4028613 | 7522.1.1.1 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C | 0.51 | 39.0 | 4.19e-01 | 94.2% | 91.5% |
| None | — | 0.51 | 42.0 | 3.80e-01 | 86.8% | 80.0% | |
| 3318664 | 2008.1.1.151 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF28664 | 0.50 | 38.0 | 4.07e-01 | 98.4% | 89.7% |
D2
medium
residues 59-226
Domain cluster:
rep: OV696620.1__CAH1193184.1__DAL_60__00060__D2-254
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03237.22 best | Terminase_6N | 25.4 | 1.40e-05 | 94.0% | 56.7% |