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IMGVR_UViG_3300029871_000021-3300029871-Ga0245314_10077240
Arc-VirIMGVR_UViG_3300029871_000021-3300029871-Ga0245314_10077240
Identity
- Kingdom:
- archaea
Quality
75.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-85
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vbiA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.59 | 52.0 | 3.78e-01 | 100.0% | 55.7% |
| 2pgeA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 38.0 | 3.34e-01 | 75.9% | 44.1% |
| 1rfmA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.57 | 50.0 | 3.78e-01 | 100.0% | 43.1% |
| 3frmA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 32.0 | 2.33e-01 | 75.9% | 20.2% |
| 3fg6A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 38.0 | 3.62e-01 | 75.9% | 93.9% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 36.0 | 3.02e-01 | 73.5% | 83.7% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 39.0 | 3.43e-01 | 84.3% | 96.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4157358 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.66 | 36.0 | 3.69e-01 | 71.1% | 56.4% |
| 4997158 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.60 | 53.0 | 3.70e-01 | 100.0% | 97.5% |
| 4976377 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.59 | 51.0 | 3.72e-01 | 98.8% | 100.0% |
| 4007983 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.58 | 33.0 | 3.21e-01 | 81.9% | 49.5% |
| 3458064 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.58 | 33.0 | 3.99e-01 | 72.3% | 88.7% |
| 4025434 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.57 | 31.0 | 3.26e-01 | 71.1% | 56.0% |
| 4441207 | 218.1.1.5 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MenC_N | 0.56 | 39.0 | 3.58e-01 | 73.5% | 57.3% |
| 3984933 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.55 | 32.0 | 3.12e-01 | 83.1% | 51.1% |
| 4027687 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.55 | 30.0 | 3.53e-01 | 71.1% | 78.2% |
| 3905302 | 284.1.3.8 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 | 0.55 | 32.0 | 3.26e-01 | 92.8% | 57.6% |
| 3857887 | 5094.1.1.11 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 | 0.54 | 32.0 | 3.39e-01 | 92.8% | 65.3% |
| 3705571 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 37.0 | 3.06e-01 | 78.3% | 40.0% |
| 3560901 | 601.19.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 | 0.54 | 32.0 | 3.38e-01 | 92.8% | 65.3% |
| 4026577 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.54 | 31.0 | 3.66e-01 | 72.3% | 83.6% |
| 4028791 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.54 | 30.0 | 3.53e-01 | 72.3% | 80.0% |
| 4994776 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.54 | 35.0 | 3.42e-01 | 78.3% | 58.9% |
| 4600929 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.54 | 40.0 | 3.72e-01 | 77.1% | 66.0% |
| 3611209 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 40.0 | 2.97e-01 | 79.5% | 59.6% |
| 4029439 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.52 | 29.0 | 3.19e-01 | 72.3% | 65.2% |
| 4297163 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.51 | 37.0 | 3.41e-01 | 75.9% | 59.0% |
| 4965259 | 218.1.1.5 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MenC_N | 0.51 | 38.0 | 3.59e-01 | 79.5% | 67.0% |
| 3261915 | 2484.1.1.31 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase | 0.50 | 41.0 | 3.05e-01 | 90.4% | 90.7% |
| 3598090 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.50 | 34.0 | 3.07e-01 | 100.0% | 50.4% |