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IMGVR_UViG_3300029928_000198-3300029928-Ga0116643_100008126
Arc-VirIMGVR_UViG_3300029928_000198-3300029928-Ga0116643_100008126
Identity
- Kingdom:
- archaea
Quality
71.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 74-204
Domain cluster:
rep: IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_57989_58669__D99-223
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 25.0 | 3.33e-01 | 76.3% | 75.4% |
| 1jg5A00 | 3.30.1410.10 | Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP | 0.58 | 36.0 | 4.40e-01 | 98.5% | 98.8% |
| 3h2gA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 42.0 | 3.32e-01 | 77.9% | 99.6% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 37.0 | 3.45e-01 | 91.6% | 53.1% |
| 4eziA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 41.0 | 3.26e-01 | 77.1% | 97.8% |
| 1a1aB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 34.0 | 3.74e-01 | 99.2% | 77.5% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 29.0 | 3.63e-01 | 77.9% | 90.7% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 29.0 | 3.34e-01 | 80.2% | 76.4% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 45.0 | 4.01e-01 | 96.9% | 75.5% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 43.0 | 3.80e-01 | 93.1% | 84.2% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 32.0 | 3.46e-01 | 98.5% | 74.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010618 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 28.0 | 3.90e-01 | 100.0% | 79.4% |
| 3253183 | 328.8.1.1 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 | 0.60 | 41.0 | 3.29e-01 | 71.0% | 66.8% |
| 3899230 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.56 | 30.0 | 3.37e-01 | 76.3% | 65.0% |
| 3269184 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 32.0 | 3.64e-01 | 100.0% | 75.8% |
| 4985492 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.55 | 47.0 | 3.78e-01 | 94.7% | 91.1% |
| 3678038 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.55 | 28.0 | 3.55e-01 | 86.3% | 84.0% |
| 3274239 | 330.1.1.18 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 | 0.54 | 37.0 | 3.92e-01 | 71.0% | 79.1% |
| 3338071 | 2484.1.1.215 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 | 0.54 | 37.0 | 3.48e-01 | 86.3% | 55.8% |
| 5078872 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.54 | 46.0 | 3.71e-01 | 95.4% | 89.3% |
| 4980169 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 46.0 | 3.46e-01 | 94.7% | 80.0% |
| 4593266 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 29.0 | 3.56e-01 | 70.2% | 88.0% |
| 3468940 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 47.0 | 3.54e-01 | 100.0% | 99.4% |
| 4975736 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 45.0 | 3.39e-01 | 94.7% | 77.4% |
| 3188192 | 3863.1.1.1 ↗ | beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Ysc84 | 0.53 | 37.0 | 3.61e-01 | 94.7% | 64.1% |
| 4020985 | 3863.1.1.0 ↗ | beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) | 0.53 | 37.0 | 3.62e-01 | 94.7% | 64.1% |
| 5047908 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 45.0 | 3.42e-01 | 94.7% | 81.2% |
| 4955214 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 44.0 | 3.31e-01 | 94.7% | 81.7% |
| 3942540 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.51 | 36.0 | 2.51e-01 | 72.5% | 30.6% |
| 3460838 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.51 | 44.0 | 3.36e-01 | 94.7% | 59.3% |
| 5026704 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 43.0 | 3.43e-01 | 94.7% | 81.8% |
| 5002461 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.50 | 36.0 | 3.73e-01 | 98.5% | 80.0% |
D2
medium
residues 7-71