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IMGVR_UViG_3300029928_000218-3300029928-Ga0116643_100021619
Arc-VirIMGVR_UViG_3300029928_000218-3300029928-Ga0116643_100021619
Identity
- Kingdom:
- archaea
Quality
65.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-52_128-169
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2feaA02 | 3.90.1470.20 | Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › | 0.79 | 55.0 | 4.51e-01 | 100.0% | 40.8% |
| 4dnjA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.68 | 43.0 | 2.60e-01 | 72.2% | 8.8% |
| 1a7lA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.66 | 53.0 | 3.66e-01 | 90.7% | 73.4% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.66 | 42.0 | 3.92e-01 | 81.5% | 52.2% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.65 | 46.0 | 3.82e-01 | 75.9% | 41.7% |
| 6sdkA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 53.0 | 4.47e-01 | 100.0% | 60.8% |
| 4ap9A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.61 | 43.0 | 4.19e-01 | 100.0% | 68.3% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.61 | 53.0 | 4.49e-01 | 100.0% | 75.5% |
| 3f2bA07 | 6.10.140.1510 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 47.0 | 4.09e-01 | 100.0% | 53.5% |
| 6s6hA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 51.0 | 4.09e-01 | 96.3% | 67.9% |
| 2uvfB02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.59 | 42.0 | 2.50e-01 | 75.9% | 30.6% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 41.0 | 3.86e-01 | 77.8% | 61.2% |
| 2kpqA01 | 6.10.250.730 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 47.0 | 4.29e-01 | 100.0% | 68.9% |
| 2lbcA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 41.0 | 4.13e-01 | 88.9% | 79.2% |
| 2o5rA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.55 | 41.0 | 4.25e-01 | 81.5% | 100.0% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.55 | 40.0 | 4.25e-01 | 81.5% | 100.0% |
| 3p9dE01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.54 | 44.0 | 2.96e-01 | 100.0% | 49.1% |
| 2qjgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 43.0 | 2.79e-01 | 94.4% | 31.6% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.52 | 36.0 | 3.34e-01 | 75.9% | 77.6% |
| 1wh5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 38.0 | 3.41e-01 | 83.3% | 57.5% |
| 3nuwA02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.50 | 43.0 | 2.92e-01 | 98.1% | 28.8% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.20e-01 | 83.3% | 52.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3706047 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.77 | 57.0 | 5.69e-01 | 92.6% | 76.4% |
| 4651138 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.70 | 49.0 | 4.83e-01 | 92.6% | 68.3% |
| 4936002 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.68 | 56.0 | 5.59e-01 | 92.6% | 92.7% |
| 3232657 | 367.1.1.0 ↗ | few secondary structure elements › Insulin-like › Insulin-like › Insulin-like | 0.66 | 48.0 | 5.10e-01 | 94.4% | 93.3% |
| 3226006 | 367.1.1.2 ↗ | few secondary structure elements › Insulin-like › Insulin-like › Insulin-like › Ins_beta | 0.65 | 47.0 | 5.02e-01 | 92.6% | 93.3% |
| 4082034 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.65 | 49.0 | 4.62e-01 | 85.2% | 72.9% |
| 3229962 | 367.1.1.0 ↗ | few secondary structure elements › Insulin-like › Insulin-like › Insulin-like | 0.64 | 49.0 | 5.19e-01 | 90.7% | 100.0% |
| 5045836 | 4953.1.1.3 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › FumaraseC_C | 0.63 | 48.0 | 4.53e-01 | 96.3% | 67.7% |
| 4961662 | 7523.1.1.28 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_8 | 0.62 | 55.0 | 3.70e-01 | 100.0% | 84.9% |
| 3587505 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.61 | 49.0 | 4.69e-01 | 92.6% | 76.9% |
| 4224437 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.61 | 51.0 | 4.73e-01 | 96.3% | 77.1% |
| 4663216 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 52.0 | 4.23e-01 | 100.0% | 81.8% |
| 4927768 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.61 | 48.0 | 4.86e-01 | 92.6% | 90.9% |
| 3983766 | 3317.1.1.7 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › DUF1016_N | 0.60 | 51.0 | 4.13e-01 | 100.0% | 50.4% |
| 3706295 | 103.1.1.103 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF29442 | 0.60 | 41.0 | 4.23e-01 | 94.4% | 78.0% |
| 3800383 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 42.0 | 3.97e-01 | 75.9% | 61.5% |
| 3515170 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.60 | 48.0 | 4.57e-01 | 92.6% | 76.9% |
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.60 | 47.0 | 4.50e-01 | 90.7% | 76.9% |
| 4039740 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.59 | 48.0 | 4.57e-01 | 92.6% | 76.9% |
| 5059610 | 148.1.3.403 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RNA_pol_Rpb1_5 | 0.59 | 46.0 | 3.43e-01 | 90.7% | 51.6% |
| 4248743 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.58 | 46.0 | 4.35e-01 | 90.7% | 85.7% |
| 4946474 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.57 | 46.0 | 4.42e-01 | 96.3% | 89.2% |
| 4351042 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.57 | 44.0 | 4.36e-01 | 100.0% | 83.1% |
| 4943757 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 35.0 | 3.38e-01 | 83.3% | 49.2% |
| 4004180 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.55 | 39.0 | 3.59e-01 | 98.1% | 53.8% |
| 4145683 | 7558.1.1.1 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase | 0.55 | 43.0 | 2.75e-01 | 90.7% | 47.6% |
| 3607923 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.52 | 37.0 | 3.78e-01 | 92.6% | 81.8% |
| 4975072 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 43.0 | 2.81e-01 | 94.4% | 25.9% |
| 4303377 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.51 | 38.0 | 3.96e-01 | 94.4% | 98.0% |
D2
medium
residues 53-127