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IMGVR_UViG_3300029928_000218-3300029928-Ga0116643_100021637
Arc-VirIMGVR_UViG_3300029928_000218-3300029928-Ga0116643_100021637
Identity
- Kingdom:
- archaea
Quality
76.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-126
Domain cluster:
rep: MW291021.1__QPL14492.1__SEA_EHYELIMAYOE_177__00175__D3-97
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF15738.12 best | YafQ_toxin | 31.4 | 2.70e-07 | 100.0% | 88.6% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ml0B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.89 | 84.0 | 8.16e-01 | 100.0% | 94.4% |
| 3bpqD00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.81 | 72.0 | 7.15e-01 | 98.8% | 93.0% |
| 6n90A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.80 | 74.0 | 7.28e-01 | 100.0% | 100.0% |
| 5cw7B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.80 | 75.0 | 7.20e-01 | 100.0% | 93.6% |
| 2otrA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.79 | 72.0 | 7.11e-01 | 100.0% | 97.8% |
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.79 | 73.0 | 7.17e-01 | 100.0% | 95.5% |
| 7bwfA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.77 | 70.0 | 6.99e-01 | 100.0% | 96.6% |
| 4mcxF00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.74 | 65.0 | 6.36e-01 | 96.4% | 98.9% |
| 2kheA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.72 | 64.0 | 6.34e-01 | 100.0% | 93.3% |
| 3zyyX03 | 3.10.20.880 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.67 | 35.0 | 3.54e-01 | 97.6% | 48.3% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 46.0 | 3.15e-01 | 72.6% | 39.6% |
| 2i0rA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 43.0 | 2.86e-01 | 70.2% | 30.8% |
| 2hesX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 43.0 | 2.92e-01 | 72.6% | 37.7% |
| 2b5nB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 43.0 | 2.89e-01 | 73.8% | 33.0% |
| 4j87A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 43.0 | 2.89e-01 | 72.6% | 39.2% |
| 1khiA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 34.0 | 3.66e-01 | 98.8% | 62.5% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 53.0 | 3.29e-01 | 100.0% | 99.2% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 53.0 | 4.64e-01 | 100.0% | 73.2% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 49.0 | 3.95e-01 | 100.0% | 73.3% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 49.0 | 4.76e-01 | 97.6% | 87.2% |
| 1e8uA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 40.0 | 2.54e-01 | 76.2% | 29.6% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 37.0 | 3.71e-01 | 98.8% | 65.9% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 39.0 | 2.57e-01 | 76.2% | 27.7% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.55 | 40.0 | 4.09e-01 | 84.5% | 79.8% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 30.0 | 3.15e-01 | 98.8% | 57.1% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 43.0 | 3.23e-01 | 90.5% | 89.7% |
| 4i9xA00 | 2.60.40.3790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.52e-01 | 98.8% | 76.5% |
| 1nr0A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 3.00e-01 | 94.0% | 98.3% |
| 6qk7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 43.0 | 2.85e-01 | 92.9% | 99.4% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1297412 | 4312.1.1.10 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin | 0.88 | 83.0 | 8.05e-01 | 100.0% | 93.4% |
| 3165472 | 4312.1.1.10 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin | 0.87 | 78.0 | 7.50e-01 | 96.4% | 92.6% |
| 5080337 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.86 | 77.0 | 7.56e-01 | 100.0% | 89.9% |
| 4940748 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.84 | 71.0 | 7.14e-01 | 100.0% | 90.4% |
| 169853 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.83 | 73.0 | 7.32e-01 | 98.8% | 92.9% |
| 5080208 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.82 | 74.0 | 7.27e-01 | 100.0% | 91.1% |
| 2807914 | 4312.1.1.6 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › YoeB_toxin | 0.82 | 75.0 | 7.37e-01 | 100.0% | 93.3% |
| 5018712 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.81 | 75.0 | 7.31e-01 | 100.0% | 93.3% |
| 5044967 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.81 | 74.0 | 7.26e-01 | 100.0% | 92.2% |
| 4937857 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.81 | 69.0 | 7.07e-01 | 100.0% | 96.2% |
| 2549544 | 4312.1.1.6 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › YoeB_toxin | 0.80 | 74.0 | 7.28e-01 | 100.0% | 100.0% |
| 4585524 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.80 | 75.0 | 7.29e-01 | 100.0% | 97.8% |
| 1877168 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.80 | 75.0 | 7.26e-01 | 100.0% | 95.7% |
| 166546 | 4312.1.1.10 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin | 0.79 | 72.0 | 7.11e-01 | 100.0% | 97.8% |
| 4646165 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.78 | 73.0 | 7.14e-01 | 100.0% | 96.7% |
| 4949569 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.78 | 70.0 | 6.91e-01 | 100.0% | 91.1% |
| 3986903 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.78 | 70.0 | 7.01e-01 | 96.4% | 98.8% |
| 4948982 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.78 | 71.0 | 6.98e-01 | 100.0% | 93.3% |
| 4463632 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.78 | 72.0 | 7.08e-01 | 100.0% | 97.8% |
| 4544637 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.78 | 72.0 | 6.96e-01 | 100.0% | 95.7% |
| 2629016 | 4312.1.1.6 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › YoeB_toxin | 0.77 | 70.0 | 6.99e-01 | 100.0% | 96.6% |
| 4937762 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.75 | 68.0 | 6.68e-01 | 100.0% | 93.3% |
| 5027871 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.74 | 68.0 | 6.54e-01 | 100.0% | 92.5% |
| 1124757 | 4312.1.1.2 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › HigB-like_toxin | 0.73 | 65.0 | 6.36e-01 | 100.0% | 98.9% |
| 3165163 | 4312.1.1.2 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › HigB-like_toxin | 0.73 | 62.0 | 6.12e-01 | 94.0% | 98.9% |
| 3559756 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.68 | 48.0 | 3.16e-01 | 72.6% | 37.0% |
| 3533653 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.66 | 45.0 | 2.83e-01 | 70.2% | 36.8% |
| 4051495 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.66 | 45.0 | 2.79e-01 | 70.2% | 30.4% |
| 4284219 | 4312.1.1.21 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › PF29782 | 0.65 | 57.0 | 5.07e-01 | 100.0% | 95.2% |
| 5022885 | 5.1.4.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 | 0.65 | 44.0 | 2.78e-01 | 70.2% | 27.7% |
| 4890944 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 45.0 | 2.91e-01 | 72.6% | 34.2% |
| 3221976 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 45.0 | 2.91e-01 | 72.6% | 37.4% |
| 4018043 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.64 | 45.0 | 2.98e-01 | 72.6% | 35.2% |
| 3765955 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.63 | 44.0 | 2.77e-01 | 73.8% | 35.0% |
| 2793081 | 5.1.3.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 | 0.63 | 44.0 | 3.10e-01 | 72.6% | 37.6% |
| 3575356 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 44.0 | 2.94e-01 | 72.6% | 28.7% |
| 4621655 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 43.0 | 2.80e-01 | 72.6% | 27.9% |
| 3211898 | 5.1.4.444 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_NOL10_N | 0.62 | 43.0 | 2.86e-01 | 72.6% | 40.0% |
| None | — | 0.62 | 42.0 | 2.72e-01 | 70.2% | 25.8% | |
| 3481354 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 43.0 | 2.88e-01 | 73.8% | 34.5% |
| 3798327 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 43.0 | 2.86e-01 | 72.6% | 40.6% |
| 3574550 | 5.1.4.275 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N | 0.61 | 43.0 | 2.87e-01 | 72.6% | 41.2% |
| None | — | 0.61 | 43.0 | 2.87e-01 | 73.8% | 31.8% | |
| 3631132 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.61 | 43.0 | 2.78e-01 | 72.6% | 30.0% |
| 4048802 | 5.1.4.369 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N | 0.61 | 42.0 | 2.40e-01 | 72.6% | 12.1% |
| 3695012 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 42.0 | 2.71e-01 | 72.6% | 30.7% |
| 3740129 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 43.0 | 2.56e-01 | 72.6% | 17.6% |
| 3466183 | 5.1.5.75 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 | 0.61 | 42.0 | 2.85e-01 | 72.6% | 40.3% |
| 3641304 | 5.1.5.75 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 | 0.61 | 42.0 | 3.31e-01 | 72.6% | 71.7% |
| 3398142 | 5.1.4.327 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd | 0.60 | 43.0 | 2.67e-01 | 73.8% | 21.0% |
| 3657704 | 5.1.5.54 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N | 0.60 | 42.0 | 3.55e-01 | 72.6% | 82.9% |
| 4943121 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.60 | 42.0 | 2.63e-01 | 72.6% | 21.9% |
| 3666797 | 5.1.4.45 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 | 0.59 | 43.0 | 2.75e-01 | 77.4% | 34.4% |
| 2074975 | 3779.1.1.0 ↗ | 0.59 | 43.0 | 3.88e-01 | 76.2% | 93.9% | |
| 3877211 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 41.0 | 2.57e-01 | 72.6% | 26.1% |
| 3585370 | 5.1.3.112 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40_2 | 0.58 | 41.0 | 2.97e-01 | 73.8% | 44.2% |
| 3530641 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.57 | 52.0 | 3.16e-01 | 100.0% | 91.6% |
| 3572186 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.57 | 48.0 | 3.33e-01 | 94.0% | 83.8% |
| 3789364 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 50.0 | 3.25e-01 | 100.0% | 34.3% |
| 3575745 | 5.1.4.90 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 | 0.55 | 48.0 | 3.18e-01 | 96.4% | 96.9% |
| 3619936 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.54 | 44.0 | 2.80e-01 | 89.3% | 96.4% |
| 3598272 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 48.0 | 3.05e-01 | 100.0% | 36.3% |
| 3390512 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 45.0 | 2.96e-01 | 89.3% | 84.5% |
| 3168104 | 5.1.5.52 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C | 0.53 | 45.0 | 2.67e-01 | 94.0% | 98.4% |
| 4283811 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.53 | 44.0 | 2.82e-01 | 92.9% | 98.0% |
| 5045692 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 2.94e-01 | 94.0% | 98.8% |
| 3919600 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 44.0 | 2.84e-01 | 96.4% | 94.1% |
| 3741661 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 44.0 | 2.93e-01 | 100.0% | 95.4% |