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IMGVR_UViG_3300030097_000093-3300030097-Ga0183658_10004921
Arc-VirIMGVR_UViG_3300030097_000093-3300030097-Ga0183658_10004921
Identity
- Kingdom:
- archaea
Quality
80.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 98-169
Domain cluster:
rep: IMGVR_UViG_3300022888_000798-3300022888-Ga0233428_10067647__D4-64
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20172.4 best | DUF6538 | 40.0 | 3.40e-10 | 81.9% | 96.7% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.66 | 54.0 | 4.12e-01 | 88.9% | 46.9% |
| 5dnlA02 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.65 | 45.0 | 4.01e-01 | 72.2% | 75.2% |
| 2eyqA07 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.64 | 48.0 | 3.80e-01 | 79.2% | 96.6% |
| 5z3gZ01 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.64 | 42.0 | 3.52e-01 | 70.8% | 38.7% |
| 3gaaB00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.63 | 48.0 | 3.27e-01 | 80.6% | 89.3% |
| 6aikB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.63 | 46.0 | 2.98e-01 | 83.3% | 17.9% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 42.0 | 4.20e-01 | 73.6% | 74.3% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 40.0 | 3.85e-01 | 77.8% | 61.4% |
| 4hhrA01 | 1.10.640.10 | Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type | 0.58 | 51.0 | 3.03e-01 | 100.0% | 65.9% |
| 4e6nB00 | 3.30.1610.20 | Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain | 0.58 | 43.0 | 3.11e-01 | 80.6% | 84.9% |
| 2ctjA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 42.0 | 3.85e-01 | 79.2% | 78.9% |
| 2xzmE02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 38.0 | 3.52e-01 | 70.8% | 96.8% |
| 3mnfA00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.56 | 40.0 | 2.91e-01 | 79.2% | 37.0% |
| 2l52A00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.55 | 35.0 | 3.24e-01 | 72.2% | 47.5% |
| 3clvA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 38.0 | 2.87e-01 | 77.8% | 49.1% |
| 2knrA00 | 3.40.1530.20 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) | 0.51 | 35.0 | 3.07e-01 | 72.2% | 48.3% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 34.0 | 3.37e-01 | 70.8% | 75.9% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3217396 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.78 | 54.0 | 3.40e-01 | 72.2% | 16.6% |
| 3952989 | 323.1.1.9 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C | 0.72 | 54.0 | 3.65e-01 | 77.8% | 89.2% |
| 4938125 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.70 | 54.0 | 5.11e-01 | 83.3% | 69.4% |
| 4029709 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.70 | 52.0 | 4.27e-01 | 77.8% | 73.6% |
| 3576850 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.68 | 60.0 | 3.83e-01 | 95.8% | 30.5% |
| 3439312 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.67 | 47.0 | 4.35e-01 | 72.2% | 60.0% |
| 4237265 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 48.0 | 4.17e-01 | 76.4% | 60.0% |
| 3190430 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 45.0 | 3.30e-01 | 70.8% | 27.0% |
| 3226526 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.65 | 58.0 | 3.72e-01 | 98.6% | 41.2% |
| 3228371 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.65 | 47.0 | 4.40e-01 | 77.8% | 93.3% |
| 5013976 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.63 | 52.0 | 4.27e-01 | 88.9% | 59.2% |
| 3614586 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.62 | 41.0 | 3.55e-01 | 70.8% | 42.4% |
| 4985406 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.61 | 44.0 | 4.25e-01 | 77.8% | 67.1% |
| 5081108 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.61 | 52.0 | 3.13e-01 | 94.4% | 48.9% |
| 3677667 | 4244.1.1.5 ↗ | a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › TraB_PrgY_gumN | 0.61 | 43.0 | 3.03e-01 | 73.6% | 59.1% |
| 3705943 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 42.0 | 3.76e-01 | 73.6% | 51.4% |
| 4944945 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.60 | 46.0 | 4.07e-01 | 83.3% | 56.2% |
| 4948309 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 40.0 | 4.18e-01 | 73.6% | 76.6% |
| 3200640 | 3680.1.1.0 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain | 0.60 | 44.0 | 3.62e-01 | 88.9% | 44.0% |
| 4474711 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.59 | 53.0 | 4.62e-01 | 95.8% | 81.9% |
| 3927290 | 136.1.1.3 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › An_peroxidase | 0.59 | 53.0 | 3.14e-01 | 100.0% | 49.2% |
| 3629452 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.59 | 48.0 | 3.54e-01 | 88.9% | 82.2% |
| 3559202 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 46.0 | 4.30e-01 | 84.7% | 95.6% |
| 3711289 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.59 | 42.0 | 3.74e-01 | 76.4% | 80.0% |
| 5075688 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.58 | 43.0 | 3.50e-01 | 80.6% | 66.2% |
| 3642345 | 136.1.1.3 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › An_peroxidase | 0.58 | 51.0 | 3.03e-01 | 100.0% | 50.6% |
| 5054973 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 39.0 | 4.03e-01 | 73.6% | 75.0% |
| 3585180 | 109.4.1.1316 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C | 0.58 | 49.0 | 2.82e-01 | 90.3% | 11.8% |
| 3952854 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.57 | 39.0 | 3.66e-01 | 75.0% | 56.7% |
| 4549715 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 39.0 | 3.70e-01 | 72.2% | 61.2% |
| 3255104 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 43.0 | 3.65e-01 | 86.1% | 49.6% |
| 3506171 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.54 | 37.0 | 2.75e-01 | 72.2% | 99.5% |
| 5055315 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.53 | 37.0 | 3.13e-01 | 73.6% | 100.0% |
| 5027412 | 3241.1.1.0 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 | 0.52 | 39.0 | 2.85e-01 | 80.6% | 95.2% |
| 3264176 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.52 | 39.0 | 3.29e-01 | 80.6% | 59.2% |
| 5010106 | 2498.1.1.49 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PhageMetallopep | 0.51 | 37.0 | 3.16e-01 | 79.2% | 74.4% |
| 5075731 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.50 | 35.0 | 3.17e-01 | 75.0% | 52.4% |
| 3197090 | 212.1.1.16 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S5_C | 0.50 | 37.0 | 3.40e-01 | 80.6% | 83.7% |
D2
medium
residues 2-39
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05367.18 best | Phage_endo_I | 36.8 | 4.10e-09 | 100.0% | 25.5% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fzrA00 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.91 | 81.0 | 5.48e-01 | 100.0% | 29.5% |
D3
medium
residues 47-83