←Back to structures
IMGVR_UViG_3300030335_000007-3300030335-Ga0188177_103551
Arc-VirIMGVR_UViG_3300030335_000007-3300030335-Ga0188177_103551
Identity
- Kingdom:
- archaea
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-132
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 32.0 | 3.94e-01 | 100.0% | 84.3% |
| 1nr6A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 54.0 | 3.66e-01 | 100.0% | 74.2% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 43.0 | 4.21e-01 | 80.3% | 75.2% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.56 | 32.0 | 3.37e-01 | 99.2% | 60.3% |
| 6qlyA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 27.0 | 3.30e-01 | 73.5% | 71.1% |
| 1q8cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.54 | 39.0 | 4.00e-01 | 75.8% | 81.8% |
| 3h2zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 39.0 | 3.56e-01 | 74.2% | 98.9% |
| 7fciA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.54 | 43.0 | 3.40e-01 | 87.1% | 69.0% |
| 2l4mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 29.0 | 3.70e-01 | 87.1% | 100.0% |
| 7d8gA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.52 | 36.0 | 3.38e-01 | 97.0% | 56.9% |
| 1l6nA02 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.51 | 33.0 | 3.36e-01 | 84.1% | 64.1% |
| 2es9A00 | 1.20.1290.30 | Mainly Alpha › Up-down Bundle › AhpD-like › | 0.51 | 37.0 | 4.08e-01 | 83.3% | 100.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961485 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 78.0 | 7.89e-01 | 99.2% | 98.5% |
| 4010407 | 101.1.5.4 ↗ | alpha arrays › HTH › HTH › Anti-sigma factor AsiA › DDE_Tnp_1_assoc | 0.76 | 51.0 | 6.09e-01 | 71.2% | 100.0% |
| 4008545 | 101.1.1.271 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_1_assoc | 0.74 | 52.0 | 6.08e-01 | 81.8% | 100.0% |
| 5070929 | 2484.1.1.332 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 | 0.74 | 58.0 | 4.29e-01 | 81.1% | 97.7% |
| 4514424 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.73 | 58.0 | 4.36e-01 | 84.1% | 100.0% |
| 4010299 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 58.0 | 4.32e-01 | 83.3% | 97.7% |
| 5005232 | 2484.1.1.332 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 | 0.72 | 54.0 | 4.12e-01 | 78.0% | 99.0% |
| 4034131 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.71 | 54.0 | 5.98e-01 | 81.8% | 99.0% |
| 5020443 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.71 | 56.0 | 4.25e-01 | 82.6% | 100.0% |
| 3954386 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.70 | 52.0 | 5.55e-01 | 76.5% | 89.6% |
| 4125245 | 101.1.2.813 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF772 | 0.69 | 54.0 | 5.82e-01 | 81.8% | 100.0% |
| 3985422 | 101.1.10.49 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Nterm_IS4 | 0.64 | 43.0 | 4.98e-01 | 84.1% | 95.8% |
| 4991127 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 34.0 | 3.69e-01 | 75.0% | 71.8% |
| 4567825 | 288.1.1.2 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CheD | 0.54 | 33.0 | 3.16e-01 | 100.0% | 52.3% |
| 5057844 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.53 | 41.0 | 4.28e-01 | 84.1% | 86.4% |
| 4948421 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 38.0 | 3.99e-01 | 75.0% | 83.5% |
| 5062173 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.97e-01 | 72.7% | 84.3% |
| 3832037 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 36.0 | 2.86e-01 | 71.2% | 36.1% |
| 3192164 | 109.4.1.1827 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27826 | 0.51 | 40.0 | 3.38e-01 | 84.1% | 57.0% |
D2
high
residues 147-221
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iejA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 49.0 | 4.95e-01 | 81.3% | 88.0% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 52.0 | 4.62e-01 | 100.0% | 78.6% |
| 2j16A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 51.0 | 4.23e-01 | 97.3% | 85.7% |
| 2pbiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 50.0 | 4.48e-01 | 94.7% | 76.9% |
| 7ncyB01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 48.0 | 4.12e-01 | 92.0% | 95.9% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.58 | 40.0 | 4.12e-01 | 100.0% | 77.5% |
| 3f1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.57 | 49.0 | 3.90e-01 | 94.7% | 53.7% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.56 | 42.0 | 3.82e-01 | 81.3% | 59.6% |
| 3l5kA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 43.0 | 4.48e-01 | 81.3% | 92.6% |
| 8etcb01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 45.0 | 3.65e-01 | 89.3% | 69.2% |
| 7vw6B01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.55 | 40.0 | 4.17e-01 | 98.7% | 88.1% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.55 | 47.0 | 3.51e-01 | 93.3% | 85.1% |
| 1q8cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.54 | 45.0 | 3.88e-01 | 97.3% | 61.4% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 39.0 | 3.43e-01 | 84.0% | 50.0% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 41.0 | 3.95e-01 | 81.3% | 78.6% |
| 1au7A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 34.0 | 3.52e-01 | 80.0% | 69.4% |
| 3tf8B00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.52 | 45.0 | 3.43e-01 | 98.7% | 100.0% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.52 | 37.0 | 3.72e-01 | 78.7% | 97.5% |
| 3zbgA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 43.0 | 2.71e-01 | 94.7% | 79.8% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.51 | 39.0 | 3.57e-01 | 84.0% | 60.2% |
| 6vhyA02 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.50 | 35.0 | 3.71e-01 | 81.3% | 82.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961486 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.80 | 66.0 | 4.14e-01 | 89.3% | 18.7% |
| 5035003 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.77 | 69.0 | 6.16e-01 | 100.0% | 81.9% |
| 5005290 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.75 | 55.0 | 5.71e-01 | 78.7% | 100.0% |
| 4933370 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.75 | 66.0 | 6.22e-01 | 98.7% | 98.9% |
| 4961908 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.73 | 58.0 | 5.73e-01 | 86.7% | 100.0% |
| 5026084 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 62.0 | 5.76e-01 | 97.3% | 84.2% |
| 4125245 | 101.1.2.813 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF772 | 0.71 | 62.0 | 5.48e-01 | 98.7% | 82.7% |
| 4952347 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 47.0 | 4.60e-01 | 72.0% | 62.4% |
| 3512113 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.68 | 50.0 | 3.26e-01 | 78.7% | 38.6% |
| 5053360 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 46.0 | 4.45e-01 | 70.7% | 64.7% |
| 5049118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 4.85e-01 | 70.7% | 81.5% |
| 4511885 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 51.0 | 5.38e-01 | 82.7% | 100.0% |
| 3544253 | 101.1.1.70 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SANT_DAMP1_like | 0.65 | 49.0 | 4.85e-01 | 81.3% | 82.5% |
| 3919175 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.64 | 55.0 | 4.88e-01 | 98.7% | 94.5% |
| 3882839 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.63 | 55.0 | 4.76e-01 | 98.7% | 65.0% |
| 3689691 | 101.1.10.61 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Clr5 | 0.63 | 49.0 | 4.77e-01 | 86.7% | 90.6% |
| 3404975 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.63 | 54.0 | 5.18e-01 | 100.0% | 93.3% |
| 3887530 | 101.1.10.41 ↗ | alpha arrays › HTH › HTH › Cyclin-like › HTH_Tnp_4 | 0.62 | 54.0 | 5.15e-01 | 98.7% | 86.7% |
| 1276701 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.60 | 52.0 | 4.42e-01 | 100.0% | 67.7% |
| 3660132 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 51.0 | 5.00e-01 | 100.0% | 90.6% |
| 4029836 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.60 | 50.0 | 3.84e-01 | 96.0% | 87.0% |
| 3905704 | 101.1.10.41 ↗ | alpha arrays › HTH › HTH › Cyclin-like › HTH_Tnp_4 | 0.59 | 52.0 | 4.84e-01 | 100.0% | 85.3% |
| 3784553 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.59 | 45.0 | 4.43e-01 | 86.7% | 88.2% |
| 3741291 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.57 | 41.0 | 4.09e-01 | 97.3% | 72.5% |
| 4489805 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.55 | 46.0 | 2.98e-01 | 98.7% | 68.3% |
| 4998143 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.55 | 45.0 | 3.36e-01 | 94.7% | 82.8% |
| 3933342 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.52 | 37.0 | 3.10e-01 | 78.7% | 85.5% |
| 3290358 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.51 | 37.0 | 3.27e-01 | 78.7% | 74.2% |
| 2627770 | 101.1.4.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou | 0.51 | 33.0 | 3.46e-01 | 78.7% | 73.5% |