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IMGVR_UViG_3300030335_000007-3300030335-Ga0188177_1035511

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300030335_000007-3300030335-Ga0188177_1035511 ↗
Kingdom:: archaea

Quality

78.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-131

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2l01A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.65	50.0	5.19e-01	100.0%	87.0%
3zieD00	3.30.110.150	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein	0.61	48.0	4.86e-01	96.3%	85.4%
4fvaC00	3.60.10.10	Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase	0.60	45.0	3.28e-01	84.0%	42.6%
3a32A01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.59	42.0	2.81e-01	74.1%	32.4%
2grvA01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.58	45.0	3.55e-01	91.4%	39.7%
1httA01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.55	39.0	2.82e-01	77.8%	36.0%
2yvwA02	3.65.10.10	Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain	0.53	39.0	2.94e-01	77.8%	98.1%
2gu0A02	3.30.428.20	Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain	0.53	45.0	3.73e-01	100.0%	78.6%
1bqnA02	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.53	37.0	3.62e-01	75.3%	96.8%
2wpvE00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	46.0	3.20e-01	100.0%	37.1%
2innB00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.52	44.0	2.76e-01	97.5%	42.0%
3netB01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.51	37.0	2.56e-01	77.8%	48.3%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5038636	101.1.2.136 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_20	0.76	54.0	5.46e-01	74.1%	86.3%
5059708	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.71	49.0	5.25e-01	72.8%	97.1%
4973726	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.65	47.0	4.20e-01	76.5%	87.0%
5061096	101.1.2.141 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_24	0.64	48.0	4.85e-01	100.0%	81.2%
3385434	2484.1.1.261 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27038	0.57	39.0	3.28e-01	70.4%	50.0%
5065568	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	42.0	3.64e-01	79.0%	86.9%
4945179	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	44.0	3.61e-01	81.5%	82.8%
3596115	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	50.0	4.35e-01	100.0%	88.0%
3699952	101.1.2.120 ↗	alpha arrays › HTH › HTH › winged helix domain › DDRGK	0.56	50.0	4.26e-01	100.0%	87.7%
None	—		0.53	42.0	2.82e-01	85.2%	78.2%
4961793	101.1.2.929 ↗	alpha arrays › HTH › HTH › winged helix domain › HVO_2833_C	0.53	44.0	3.10e-01	97.5%	31.5%
4998403	242.1.1.7 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3	0.50	39.0	3.52e-01	84.0%	90.3%