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IMGVR_UViG_3300030493_000399-3300030493-Ga0310040_100013118

Arc-Vir

IMGVR_UViG_3300030493_000399-3300030493-Ga0310040_100013118

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-105
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 37.8 2.40e-09 90.5% 50.6%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.89 76.0 6.19e-01 96.2% 52.5%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 73.0 5.70e-01 99.0% 69.2%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.60 41.0 3.62e-01 70.5% 90.3%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.95e-01 73.3% 100.0%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.53e-01 71.4% 89.1%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.85e-01 77.1% 94.8%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.63e-01 75.2% 92.4%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 3.19e-01 72.4% 69.6%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 4.25e-01 83.8% 98.8%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.55e-01 81.0% 62.3%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.52 38.0 3.68e-01 79.0% 98.4%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 3.47e-01 72.4% 93.2%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 35.0 3.32e-01 72.4% 94.0%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4428937 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.95 80.0 7.60e-01 89.5% 76.7%
5010452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.94 79.0 7.74e-01 89.5% 82.7%
4973226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.94 81.0 7.68e-01 90.5% 78.3%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.93 79.0 6.34e-01 89.5% 51.1%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.93 80.0 7.57e-01 93.3% 78.3%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.93 83.0 7.77e-01 97.1% 78.4%
4930303 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.92 79.0 7.61e-01 93.3% 80.9%
4966682 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.91 73.0 7.08e-01 87.6% 75.7%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.91 77.0 6.36e-01 93.3% 54.1%
4949702 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.91 79.0 7.52e-01 99.0% 79.2%
4936284 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.91 78.0 7.50e-01 93.3% 80.9%
5035582 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 74.0 7.19e-01 89.5% 78.3%
3589779 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 78.0 6.74e-01 91.4% 80.7%
4981577 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 77.0 7.18e-01 97.1% 76.0%
5052502 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 80.0 7.20e-01 94.3% 77.0%
5032561 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 67.0 6.78e-01 87.6% 79.0%
5037644 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 74.0 7.01e-01 99.0% 76.7%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 74.0 6.12e-01 89.5% 62.3%
4580960 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 81.0 7.26e-01 98.1% 75.0%
5029991 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 76.0 7.11e-01 97.1% 76.8%
4331898 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 67.0 7.25e-01 80.0% 100.0%
5052541 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 75.0 7.04e-01 90.5% 80.0%
4938259 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.87 72.0 6.40e-01 87.6% 77.9%
5080069 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 73.0 6.92e-01 88.6% 76.7%
4979786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 75.0 7.11e-01 92.4% 79.2%
3942448 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 73.0 6.36e-01 88.6% 75.3%
4996190 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 73.0 6.87e-01 88.6% 82.4%
5030307 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 74.0 6.90e-01 93.3% 75.2%
5028332 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 74.0 6.96e-01 97.1% 76.0%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 72.0 5.86e-01 93.3% 51.1%
3586881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 74.0 6.45e-01 90.5% 80.0%
4961948 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 72.0 6.88e-01 88.6% 76.7%
4413773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 80.0 7.21e-01 97.1% 78.5%
4357768 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 80.0 7.30e-01 97.1% 80.0%
3587374 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 76.0 6.38e-01 93.3% 78.8%
4380833 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 70.0 5.88e-01 90.5% 54.5%
4134015 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 76.0 6.49e-01 93.3% 83.2%
4314510 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 69.0 6.85e-01 90.5% 81.8%
4313957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 72.0 6.51e-01 88.6% 83.7%
4192665 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 72.0 6.89e-01 89.5% 81.7%
4964439 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 75.0 5.77e-01 93.3% 63.3%
5072041 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 74.0 6.86e-01 97.1% 74.6%
4285602 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 77.0 7.05e-01 100.0% 76.9%
4998701 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 70.0 5.77e-01 87.6% 52.2%
4940211 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 73.0 6.05e-01 92.4% 55.9%
4964228 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 76.0 6.90e-01 100.0% 74.1%
4940128 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 70.0 6.54e-01 87.6% 72.8%
5058465 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 73.0 6.86e-01 100.0% 76.8%
5081700 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 78.0 6.53e-01 97.1% 83.6%
184514 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 72.0 6.18e-01 90.5% 88.0%
4028841 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 71.0 6.42e-01 93.3% 68.9%
4933965 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 73.0 6.81e-01 97.1% 76.8%
5003452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 71.0 6.57e-01 89.5% 75.4%
4929009 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 74.0 6.83e-01 93.3% 76.9%
4210863 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 77.0 7.10e-01 97.1% 80.8%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 77.0 6.85e-01 97.1% 80.7%
4966027 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 73.0 5.90e-01 94.3% 52.7%
5054951 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 75.0 6.86e-01 97.1% 76.2%
4053930 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 70.0 6.13e-01 89.5% 84.7%
4980638 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 73.0 6.36e-01 93.3% 72.7%
4962166 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 69.0 5.57e-01 88.6% 49.7%
4932090 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 71.0 6.61e-01 90.5% 82.4%
3954716 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 72.0 6.47e-01 93.3% 77.1%
5030401 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 74.0 6.70e-01 98.1% 74.1%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 68.0 5.51e-01 87.6% 52.4%
4961917 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 70.0 5.61e-01 90.5% 50.5%
4278298 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 76.0 6.90e-01 99.0% 83.7%
5011490 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 72.0 6.31e-01 94.3% 81.3%
4952765 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 77.0 6.85e-01 100.0% 77.9%
4137254 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 72.0 6.21e-01 94.3% 78.1%
4200953 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 75.0 6.50e-01 99.0% 76.8%
4034079 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 76.0 6.91e-01 100.0% 86.7%
4180367 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 74.0 6.26e-01 98.1% 84.8%
4969226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 69.0 6.23e-01 89.5% 70.4%
4959043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 67.0 6.18e-01 87.6% 86.2%
4032881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 74.0 6.74e-01 98.1% 82.2%
3587110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 75.0 6.53e-01 100.0% 80.7%
3943153 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 72.0 6.67e-01 96.2% 80.0%
4153666 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 75.0 6.77e-01 99.0% 77.0%
5083074 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 73.0 6.36e-01 97.1% 80.7%
3589594 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 74.0 6.42e-01 100.0% 85.8%
3957659 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 70.0 6.38e-01 93.3% 81.5%
4931987 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 67.0 6.58e-01 88.6% 87.3%
4042318 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 74.0 6.71e-01 99.0% 80.7%
5018485 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.79 73.0 6.12e-01 99.0% 72.4%
5027341 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 68.0 5.85e-01 100.0% 60.6%
3979114 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 67.0 6.22e-01 90.5% 73.1%
4961786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 71.0 6.27e-01 97.1% 70.7%
4964778 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 71.0 5.94e-01 96.2% 84.7%
4247514 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 72.0 6.52e-01 97.1% 77.8%
4338286 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 73.0 6.64e-01 99.0% 77.0%
3587645 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 65.0 5.94e-01 87.6% 79.3%
4082783 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 72.0 6.21e-01 100.0% 79.4%
3969558 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 72.0 6.57e-01 99.0% 77.8%
4004713 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 68.0 6.24e-01 94.3% 73.3%
3941418 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.77 66.0 6.28e-01 90.5% 80.8%
3964227 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 68.0 6.29e-01 94.3% 76.2%
3945160 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 68.0 6.29e-01 97.1% 84.6%
3964171 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 66.0 5.49e-01 97.1% 58.0%
D2 medium residues 106-185
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 35.2 1.50e-08 83.8% 33.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4021119 101.1.8.7 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II 0.71 61.0 3.98e-01 98.8% 22.4%
5053723 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.65 46.0 5.19e-01 72.5% 96.7%
4183693 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.56 48.0 3.65e-01 97.5% 54.4%