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IMGVR_UViG_3300030493_000406-3300030493-Ga0310040_1000172116
Arc-VirIMGVR_UViG_3300030493_000406-3300030493-Ga0310040_1000172116
Identity
- Kingdom:
- archaea
Quality
95.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-83
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fk5A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 44.0 | 2.94e-01 | 94.4% | 93.5% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 35.0 | 3.65e-01 | 97.2% | 74.2% |
| 3deeA02 | 3.90.930.50 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.53 | 30.0 | 2.60e-01 | 70.4% | 35.1% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 39.0 | 3.24e-01 | 87.3% | 60.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3881013 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.65 | 36.0 | 2.79e-01 | 77.5% | 24.4% |
| 3741377 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.62 | 46.0 | 3.86e-01 | 80.3% | 72.0% |
| 5021958 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 32.0 | 3.64e-01 | 71.8% | 68.0% |
| 3236014 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.56 | 47.0 | 3.07e-01 | 94.4% | 95.7% |
| 4026542 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.54 | 44.0 | 3.15e-01 | 95.8% | 94.6% |
| 3477005 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.53 | 44.0 | 2.80e-01 | 94.4% | 49.6% |
| 4996624 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 41.0 | 2.70e-01 | 87.3% | 34.9% |
| 2528751 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.52 | 30.0 | 3.25e-01 | 78.9% | 66.1% |
| 5009916 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.52 | 38.0 | 3.41e-01 | 80.3% | 86.7% |
| 3909234 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.51 | 39.0 | 3.35e-01 | 83.1% | 70.4% |
| 4946882 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 35.0 | 3.92e-01 | 97.2% | 94.5% |
| 162286 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.50 | 38.0 | 3.28e-01 | 84.5% | 65.6% |
| 4336245 | 2004.1.1.567 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23 | 0.50 | 39.0 | 2.32e-01 | 87.3% | 18.8% |
D2
high
residues 87-243
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04015.18 best | DUF362 | 62.4 | 8.90e-17 | 66.9% | 48.7% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bplA01 | 3.30.750.90 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.54 | 33.0 | 3.89e-01 | 98.7% | 91.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5057785 | 7601.1.1.2 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 | 0.88 | 66.0 | 5.08e-01 | 100.0% | 38.1% |
| 4944590 | 7601.1.1.2 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 | 0.85 | 67.0 | 5.34e-01 | 100.0% | 45.4% |
| 5076354 | 7601.1.1.2 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 | 0.84 | 66.0 | 5.09e-01 | 100.0% | 39.7% |
| 5054320 | 7601.1.1.2 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 | 0.79 | 61.0 | 5.06e-01 | 99.4% | 48.5% |
| 4941077 | 7601.1.1.2 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 | 0.74 | 60.0 | 4.77e-01 | 100.0% | 45.5% |
| 4998243 | 7601.1.1.2 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 | 0.70 | 66.0 | 5.15e-01 | 100.0% | 51.7% |
| 3582956 | 101.1.15.2 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C | 0.55 | 24.0 | 3.31e-01 | 79.6% | 85.7% |
| None | — | 0.54 | 22.0 | 3.07e-01 | 87.9% | 74.7% | |
| 3966057 | 4239.2.1.1 ↗ | alpha arrays › DNA polymerase III theta subunit-like › LasR-specific antiactivator (QslA) › LasR-specific antiactivator (QslA) › QslA | 0.50 | 25.0 | 3.13e-01 | 99.4% | 75.8% |