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IMGVR_UViG_3300031260_000123-3300031260-Ga0325117_1308222
Arc-VirIMGVR_UViG_3300031260_000123-3300031260-Ga0325117_1308222
Identity
- Kingdom:
- archaea
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-95_118-130
Domain cluster:
rep: RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00098__D78-155
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03412.22 best | Peptidase_C39 | 63.7 | 2.20e-17 | 78.7% | 64.7% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.90 | 67.0 | 6.24e-01 | 76.9% | 69.5% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.84 | 63.0 | 5.67e-01 | 76.9% | 62.4% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.82 | 61.0 | 5.81e-01 | 76.9% | 84.0% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.71 | 45.0 | 4.47e-01 | 75.0% | 60.2% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 38.0 | 4.80e-01 | 70.4% | 90.5% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 34.0 | 4.69e-01 | 80.6% | 100.0% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 38.0 | 4.53e-01 | 73.1% | 82.6% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 37.0 | 4.43e-01 | 81.5% | 80.8% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 35.0 | 4.32e-01 | 73.1% | 84.8% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 38.0 | 4.69e-01 | 99.1% | 96.9% |
| 2e70A00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 35.0 | 4.14e-01 | 78.7% | 78.9% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.64 | 46.0 | 4.38e-01 | 74.1% | 73.2% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 43.0 | 3.51e-01 | 74.1% | 63.3% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 39.0 | 4.07e-01 | 77.8% | 71.6% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 43.0 | 3.07e-01 | 77.8% | 94.9% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 35.0 | 4.07e-01 | 72.2% | 84.6% |
| 5ocqA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 3.08e-01 | 75.0% | 100.0% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 32.0 | 3.51e-01 | 90.7% | 65.6% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.57 | 30.0 | 3.88e-01 | 74.1% | 100.0% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 39.0 | 4.08e-01 | 70.4% | 89.6% |
| 3ceyB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 3.51e-01 | 73.1% | 72.3% |
| 1qftB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 41.0 | 3.60e-01 | 83.3% | 86.4% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 33.0 | 3.50e-01 | 74.1% | 72.3% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 38.0 | 2.88e-01 | 75.9% | 94.1% |
| 2l1tA00 | 2.30.110.70 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.50 | 38.0 | 3.82e-01 | 78.7% | 94.5% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4261492 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.95 | 71.0 | 6.48e-01 | 76.9% | 61.5% |
| 3963455 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.92 | 69.0 | 6.10e-01 | 76.9% | 64.1% |
| 4405252 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.91 | 68.0 | 6.13e-01 | 76.9% | 65.0% |
| 3972956 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.90 | 67.0 | 5.94e-01 | 76.9% | 57.2% |
| 3385461 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.89 | 65.0 | 5.84e-01 | 75.9% | 63.4% |
| 3947337 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.88 | 66.0 | 5.71e-01 | 76.9% | 53.5% |
| 3970579 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.87 | 65.0 | 5.70e-01 | 76.9% | 57.3% |
| 3987478 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.87 | 65.0 | 6.03e-01 | 76.9% | 63.8% |
| 3972547 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.86 | 65.0 | 5.59e-01 | 77.8% | 55.0% |
| 2570822 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.86 | 64.0 | 5.73e-01 | 76.9% | 60.7% |
| 3968842 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.85 | 63.0 | 5.89e-01 | 76.9% | 65.4% |
| 4256943 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.84 | 63.0 | 5.74e-01 | 77.8% | 64.3% |
| 2444014 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.84 | 65.0 | 5.80e-01 | 79.6% | 60.6% |
| 4046385 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.83 | 62.0 | 5.60e-01 | 76.9% | 62.9% |
| 4064452 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.83 | 62.0 | 5.59e-01 | 76.9% | 59.3% |
| 4321173 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.73 | 38.0 | 5.02e-01 | 76.9% | 94.8% |
| 3914746 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.71 | 38.0 | 4.65e-01 | 70.4% | 81.4% |
| 3261395 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 39.0 | 5.07e-01 | 75.9% | 100.0% |
| 3037102 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 39.0 | 4.91e-01 | 75.0% | 93.5% |
| 4000280 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 36.0 | 4.94e-01 | 73.1% | 100.0% |
| 4027422 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.69 | 37.0 | 4.89e-01 | 75.0% | 100.0% |
| 140210 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 38.0 | 4.53e-01 | 73.1% | 82.6% |
| 3602921 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 36.0 | 4.81e-01 | 72.2% | 100.0% |
| 3928711 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 40.0 | 4.44e-01 | 81.5% | 74.1% |
| 1884741 | 4.1.1.130 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_19 | 0.67 | 38.0 | 4.82e-01 | 75.9% | 100.0% |
| 4540843 | 4.1.1.434 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2642 | 0.67 | 37.0 | 4.70e-01 | 79.6% | 90.8% |
| 3398093 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.67 | 37.0 | 4.76e-01 | 79.6% | 96.7% |
| 3620554 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 45.0 | 4.83e-01 | 70.4% | 92.6% |
| 3709029 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 36.0 | 4.67e-01 | 79.6% | 96.7% |
| 3228278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 36.0 | 4.49e-01 | 82.4% | 89.2% |
| 3964733 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 34.0 | 4.64e-01 | 73.1% | 100.0% |
| 3649741 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.65 | 36.0 | 4.20e-01 | 81.5% | 77.3% |
| 3326980 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.64 | 37.0 | 4.66e-01 | 79.6% | 100.0% |
| 3998022 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.64 | 34.0 | 4.50e-01 | 97.2% | 100.0% |
| 4287411 | 4.1.1.182 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2097 | 0.64 | 41.0 | 4.66e-01 | 79.6% | 87.5% |
| 3577864 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.64 | 39.0 | 4.28e-01 | 95.4% | 76.5% |
| 1145920 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.62 | 35.0 | 3.93e-01 | 98.1% | 71.1% |
| 3363360 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.62 | 36.0 | 4.00e-01 | 81.5% | 71.8% |
| 3290509 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.60 | 43.0 | 4.66e-01 | 75.0% | 90.0% |
| 3518287 | 4.1.1.347 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 | 0.58 | 42.0 | 4.13e-01 | 74.1% | 97.4% |
| 3877485 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 38.0 | 4.20e-01 | 93.5% | 83.5% |
| 5065747 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.58 | 43.0 | 4.69e-01 | 95.4% | 93.3% |
| 4646501 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 3.81e-01 | 77.8% | 77.4% |
| 3428486 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.58 | 39.0 | 4.40e-01 | 79.6% | 92.5% |
| 3642001 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.56 | 36.0 | 4.33e-01 | 77.8% | 100.0% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 40.0 | 3.13e-01 | 76.9% | 44.7% |
| 3574613 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.53 | 39.0 | 4.05e-01 | 98.1% | 83.0% |
| 3833030 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.52 | 38.0 | 3.53e-01 | 75.9% | 82.2% |
| 4318415 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.51 | 37.0 | 3.94e-01 | 76.9% | 97.9% |
| 3354387 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.51 | 36.0 | 4.01e-01 | 81.5% | 94.1% |
| 3768094 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.50 | 39.0 | 4.03e-01 | 96.3% | 85.7% |
| 4418620 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 36.0 | 2.13e-01 | 95.4% | 8.1% |
D2
medium
residues 135-189