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IMGVR_UViG_3300031278_000063-3300031278-Ga0307431_10044796
Arc-VirIMGVR_UViG_3300031278_000063-3300031278-Ga0307431_10044796
Identity
- Kingdom:
- archaea
Quality
91.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-41_113-137_153-177
Domain cluster:
rep: KP836355.1__AJW76918.1__UF08_29__00029__D1-37_105-126_144-159
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b4nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 44.0 | 4.37e-01 | 70.2% | 70.5% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 46.0 | 4.26e-01 | 83.3% | 83.3% |
| 1o75A04 | 2.60.40.1270 | Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain D | 0.58 | 39.0 | 3.95e-01 | 76.2% | 69.5% |
| 3f7eA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 46.0 | 4.06e-01 | 88.1% | 90.6% |
| 5yjlD01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 47.0 | 3.98e-01 | 90.5% | 77.5% |
| 8gq6A01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.57 | 40.0 | 2.77e-01 | 96.4% | 20.5% |
| 3mpcA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 3.91e-01 | 77.4% | 65.6% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.56 | 31.0 | 3.20e-01 | 88.1% | 56.4% |
| 3sknA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 3.77e-01 | 77.4% | 71.7% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 4.02e-01 | 76.2% | 78.5% |
| 1cs6A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 3.56e-01 | 77.4% | 62.9% |
| 3kg6C00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 43.0 | 3.04e-01 | 89.3% | 39.0% |
| 6m3yA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.83e-01 | 86.9% | 73.0% |
| 2yd9A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.51e-01 | 77.4% | 65.5% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.52 | 36.0 | 3.00e-01 | 72.6% | 80.1% |
| 1y7bA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 46.0 | 3.45e-01 | 97.6% | 70.3% |
| 2ibgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.57e-01 | 76.2% | 65.7% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.75e-01 | 88.1% | 61.2% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.52 | 26.0 | 3.06e-01 | 76.2% | 67.9% |
| 3n6yA01 | 2.60.40.2390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.21e-01 | 70.2% | 67.9% |
| 2b3rA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 37.0 | 3.35e-01 | 78.6% | 74.2% |
| 3kuvB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 42.0 | 3.67e-01 | 91.7% | 85.7% |
| 1x5xA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 3.24e-01 | 70.2% | 56.0% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.50 | 37.0 | 3.48e-01 | 78.6% | 73.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3627472 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.62 | 42.0 | 3.91e-01 | 70.2% | 60.0% |
| 3906455 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 40.0 | 4.64e-01 | 76.2% | 95.0% |
| 3483304 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 48.0 | 4.03e-01 | 89.3% | 76.0% |
| 3416171 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 40.0 | 3.61e-01 | 70.2% | 68.3% |
| 3289725 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.59 | 48.0 | 4.19e-01 | 89.3% | 89.2% |
| 4980544 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 42.0 | 4.26e-01 | 77.4% | 77.6% |
| 3446646 | 11.1.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C | 0.57 | 46.0 | 4.89e-01 | 86.9% | 100.0% |
| 3468653 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 41.0 | 4.38e-01 | 77.4% | 88.0% |
| 3927610 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 37.0 | 3.53e-01 | 70.2% | 60.0% |
| 3247492 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 36.0 | 3.65e-01 | 75.0% | 67.1% |
| 3924126 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.77e-01 | 76.2% | 67.8% |
| 3218648 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 36.0 | 3.61e-01 | 70.2% | 71.1% |
| 4002825 | 11.1.1.958 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7652 | 0.53 | 38.0 | 3.71e-01 | 77.4% | 70.5% |
| 3882649 | 11.1.1.21 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tissue_fac | 0.52 | 37.0 | 3.69e-01 | 77.4% | 74.4% |
| 3882154 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.52 | 40.0 | 3.26e-01 | 86.9% | 64.0% |
| None | — | 0.51 | 46.0 | 2.99e-01 | 100.0% | 57.1% | |
| 3499261 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.59e-01 | 88.1% | 79.2% |
| 3784710 | 5.1.5.213 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 | 0.50 | 45.0 | 2.79e-01 | 100.0% | 49.9% |
| 5060240 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 3.54e-01 | 70.2% | 77.3% |
D2
medium
residues 67-112_138-152_178-330
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18906.6 best | Phage_tube_2 | 59.9 | 4.30e-16 | 59.4% | 41.3% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.66 | 44.0 | 5.01e-01 | 73.8% | 89.4% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 35.0 | 4.53e-01 | 74.8% | 91.1% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.62 | 41.0 | 4.90e-01 | 73.8% | 95.9% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 35.0 | 4.57e-01 | 89.7% | 99.2% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 37.0 | 4.65e-01 | 81.8% | 100.0% |
| 2hq9B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 36.0 | 4.43e-01 | 81.8% | 100.0% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.56 | 21.0 | 3.40e-01 | 83.6% | 90.0% |
| 2vpaA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 41.0 | 4.26e-01 | 92.1% | 81.9% |
| 1yhpA02 | 2.60.40.1720 | Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 | 0.51 | 28.0 | 3.63e-01 | 75.2% | 93.3% |
| 1lfwA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 23.0 | 3.20e-01 | 70.1% | 84.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.81 | 52.0 | 6.44e-01 | 92.5% | 99.3% |
| 5080512 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.79 | 73.0 | 6.20e-01 | 96.7% | 78.2% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.76 | 46.0 | 5.94e-01 | 71.0% | 100.0% |
| 5040332 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.75 | 41.0 | 5.55e-01 | 93.0% | 100.0% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.73 | 52.0 | 5.93e-01 | 94.9% | 93.9% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.73 | 67.0 | 6.14e-01 | 95.8% | 81.9% |
| 2101633 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.72 | 51.0 | 5.75e-01 | 94.4% | 91.6% |
| 3942090 | 1.1.5.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube | 0.71 | 49.0 | 5.61e-01 | 70.6% | 92.1% |
| 3502370 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.70 | 49.0 | 5.62e-01 | 71.5% | 94.4% |
| 4960006 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 36.0 | 4.79e-01 | 75.7% | 100.0% |
| 1563850 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.66 | 44.0 | 5.01e-01 | 73.8% | 89.4% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.65 | 43.0 | 5.08e-01 | 72.9% | 92.9% |
| 5048653 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.57 | 40.0 | 4.65e-01 | 86.9% | 98.7% |
| 4954301 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.55 | 27.0 | 3.22e-01 | 92.5% | 66.0% |
| 3726341 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.51 | 43.0 | 4.28e-01 | 88.3% | 97.8% |