Back to structures

IMGVR_UViG_3300031280_000001-3300031280-Ga0307428_10001641

Arc-Vir

IMGVR_UViG_3300031280_000001-3300031280-Ga0307428_10001641

Quality

49.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 825-940
PDB
D2 high residues 962-1089
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cswC01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.58 35.0 3.81e-01 70.3% 71.7%
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 32.0 3.05e-01 70.3% 45.5%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 39.0 3.75e-01 73.4% 97.2%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.54 39.0 3.47e-01 75.0% 72.2%
2uuvB01 3.40.462.40 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix 0.53 38.0 3.06e-01 75.8% 65.9%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 36.0 2.76e-01 73.4% 78.0%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 37.0 3.05e-01 75.0% 69.0%
2ns6A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.51 41.0 3.61e-01 84.4% 76.5%
2gi3A01 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.51 45.0 3.28e-01 99.2% 58.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3707615 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 43.0 4.06e-01 74.2% 78.1%
3849773 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.55 39.0 3.18e-01 74.2% 44.0%
3269530 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.54 40.0 3.67e-01 78.1% 79.4%
3962319 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 37.0 3.50e-01 70.3% 76.7%
3869277 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.52 38.0 3.40e-01 76.6% 95.1%
3269736 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.51 33.0 3.88e-01 81.2% 93.3%
5065383 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.51 42.0 3.52e-01 88.3% 85.9%
3944961 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.51 44.0 3.66e-01 99.2% 81.2%
3714989 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 36.0 3.07e-01 75.8% 95.1%
4448148 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.50 30.0 2.76e-01 94.5% 43.5%
3496493 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.50 38.0 3.44e-01 80.5% 92.8%
D3 medium residues 43-82
PDB
D4 medium residues 207-262
PDB
D5 medium residues 341-400
PDB
D6 medium residues 444-562
PDB
D7 medium residues 710-807
PDB
D8 medium residues 1100-1233
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.66 49.0 5.19e-01 76.9% 87.3%
4ewcA03 1.20.120.1660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 35.0 4.56e-01 75.4% 93.3%
3pvuA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.65 40.0 4.86e-01 79.9% 100.0%
8etcb01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 51.0 4.94e-01 83.6% 95.9%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.62 55.0 4.39e-01 94.8% 100.0%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 45.0 4.70e-01 75.4% 100.0%
1sziA02 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.62 49.0 4.90e-01 84.3% 95.6%
2p61A00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.60 46.0 4.92e-01 79.9% 93.9%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.60 45.0 4.70e-01 78.4% 100.0%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.59 47.0 4.12e-01 100.0% 57.1%
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.59 45.0 3.37e-01 100.0% 32.9%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.58 47.0 4.60e-01 86.6% 100.0%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.58 47.0 4.31e-01 86.6% 84.7%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 47.0 4.91e-01 86.6% 100.0%
2ap3A00 1.20.120.570 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like 0.58 47.0 4.18e-01 88.1% 84.9%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.57 37.0 3.63e-01 93.3% 59.2%
3v5uA02 1.20.1420.30 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region 0.57 44.0 3.80e-01 83.6% 51.1%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.56 49.0 3.67e-01 94.0% 100.0%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.56 38.0 4.38e-01 87.3% 97.9%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 39.0 4.38e-01 100.0% 96.0%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 43.0 4.08e-01 97.0% 68.3%
1wu3I00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 42.0 4.03e-01 80.6% 99.4%
4anoA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 43.0 3.74e-01 82.8% 63.2%
1u7gA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.55 43.0 3.20e-01 85.1% 71.8%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 38.0 3.50e-01 70.1% 97.6%
2fji101 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.53 45.0 3.92e-01 93.3% 80.4%
4p3gD00 1.10.3450.40 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain 0.53 40.0 3.56e-01 80.6% 82.6%
1ze0A01 1.20.120.700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nitrate reductase, subunit delta (NarJ) 0.52 31.0 3.64e-01 72.4% 90.5%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.52 39.0 4.07e-01 80.6% 95.1%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 30.0 3.68e-01 89.6% 93.8%
5dicA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.51 35.0 3.77e-01 72.4% 100.0%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600869 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.71 45.0 4.81e-01 100.0% 73.9%
4253651 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.70 34.0 4.16e-01 91.8% 71.8%
3386352 4207.1.1.104 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Bac_export_2 0.68 44.0 4.75e-01 100.0% 78.2%
3933045 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.67 43.0 3.80e-01 95.5% 45.0%
4264118 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.67 49.0 5.34e-01 76.9% 91.8%
4448573 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.66 56.0 5.23e-01 91.0% 93.9%
4990419 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.66 53.0 4.96e-01 83.6% 89.4%
3999236 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.66 30.0 3.39e-01 77.6% 53.3%
54604 601.14.1.0 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.66 49.0 5.17e-01 76.9% 87.3%
3995513 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 36.0 3.49e-01 90.3% 48.3%
3958570 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.65 42.0 3.68e-01 94.0% 44.6%
3616490 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.64 38.0 3.69e-01 91.0% 52.0%
3953720 5086.1.1.221 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › MMPL 0.64 41.0 3.63e-01 94.8% 43.5%
3756948 601.19.1.17 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 0.64 56.0 5.18e-01 96.3% 93.5%
3437020 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.63 51.0 4.87e-01 85.1% 92.3%
4115486 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.62 39.0 3.59e-01 95.5% 50.9%
3599199 601.30.1.0 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 0.61 48.0 4.63e-01 85.1% 89.7%
5035065 141.1.1.3 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.60 49.0 3.77e-01 88.8% 83.9%
3954586 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.60 40.0 3.70e-01 97.0% 52.9%
3962493 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.60 40.0 3.75e-01 97.0% 54.5%
3282593 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.60 41.0 3.36e-01 91.8% 38.7%
3396400 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 41.0 4.26e-01 94.0% 75.2%
4169706 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.59 38.0 3.20e-01 86.6% 36.4%
3185353 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.59 50.0 5.09e-01 91.0% 93.8%
3624154 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.59 44.0 3.95e-01 78.4% 95.8%
3625903 1188.1.1.1 alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.59 50.0 3.92e-01 91.0% 70.0%
4797518 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.59 49.0 4.60e-01 90.3% 86.6%
3573792 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.58 44.0 4.47e-01 80.6% 92.6%
4457393 5067.1.1.4 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL 0.58 47.0 2.86e-01 87.3% 63.8%
3951106 304.28.2.2 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › MMPL 0.58 40.0 3.68e-01 97.0% 54.3%
3733140 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 46.0 4.40e-01 100.0% 74.2%
3734712 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.56 48.0 3.77e-01 94.8% 68.5%
3697355 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 46.0 4.38e-01 100.0% 75.5%
3319315 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.55 47.0 3.78e-01 94.0% 74.2%
3639073 4121.1.1.6 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › DUF155 0.55 47.0 3.68e-01 93.3% 67.7%
4979261 5079.1.1.1 alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.52 45.0 4.06e-01 94.0% 86.3%
3493924 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.52 48.0 3.78e-01 100.0% 74.4%
3741883 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.52 44.0 3.66e-01 92.5% 63.8%
4078973 1075.5.1.4 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt 0.51 42.0 3.75e-01 88.8% 69.2%
3288570 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.51 45.0 3.51e-01 95.5% 73.4%
3710472 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.51 42.0 3.51e-01 91.8% 66.8%
D9 medium residues 1254-1303
PDB