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IMGVR_UViG_3300031280_000001-3300031280-Ga0307428_100016410
Arc-VirIMGVR_UViG_3300031280_000001-3300031280-Ga0307428_100016410
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54_183-236
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.56 | 39.0 | 3.80e-01 | 71.0% | 80.7% |
| 1oj4A01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 38.0 | 3.30e-01 | 100.0% | 44.8% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.55 | 42.0 | 3.60e-01 | 82.2% | 65.2% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 29.0 | 2.87e-01 | 92.5% | 49.5% |
| 1olmC01 | 3.40.525.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain | 0.54 | 38.0 | 2.77e-01 | 72.9% | 58.0% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.53 | 40.0 | 3.87e-01 | 82.2% | 70.2% |
| 1tk1A00 | 3.40.1500.10 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic | 0.52 | 40.0 | 3.21e-01 | 82.2% | 87.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3255535 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.54 | 41.0 | 3.14e-01 | 82.2% | 57.7% |
| 4209908 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.54 | 38.0 | 3.59e-01 | 100.0% | 59.3% |
| 3942661 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.51 | 38.0 | 3.40e-01 | 78.5% | 85.8% |
| 3615165 | 148.1.3.259 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CC_Cfap43 | 0.51 | 37.0 | 3.15e-01 | 76.6% | 76.7% |
D2
medium
residues 58-112
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 40.0 | 3.08e-01 | 92.7% | 63.3% |
| 4hjwA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 39.0 | 2.48e-01 | 92.7% | 85.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030180 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.60 | 44.0 | 4.58e-01 | 81.8% | 88.0% |
| 5028075 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.58 | 41.0 | 4.24e-01 | 78.2% | 84.0% |
| 5078891 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.54 | 38.0 | 3.85e-01 | 78.2% | 87.3% |
| 5035358 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.52 | 36.0 | 3.70e-01 | 81.8% | 96.4% |
| 4141047 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.51 | 37.0 | 2.54e-01 | 83.6% | 29.6% |
D3
medium
residues 113-173
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gs5A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.69 | 38.0 | 3.13e-01 | 100.0% | 30.5% |
| 2clsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 43.0 | 3.04e-01 | 70.5% | 30.2% |
| 3mxlA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.63 | 51.0 | 4.39e-01 | 93.4% | 94.2% |
| 1u8zA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 42.0 | 3.09e-01 | 70.5% | 30.9% |
| 4yxtA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.61 | 46.0 | 3.54e-01 | 85.2% | 64.5% |
| 2bhkA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.59 | 43.0 | 3.61e-01 | 78.7% | 82.9% |
| 4mpoB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 39.0 | 2.89e-01 | 70.5% | 43.2% |
| 8affD01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.58 | 33.0 | 3.04e-01 | 100.0% | 42.3% |
| 2jbrA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.57 | 48.0 | 4.20e-01 | 96.7% | 96.8% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.57 | 47.0 | 3.78e-01 | 96.7% | 93.8% |
| 7r5mA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.57 | 48.0 | 3.34e-01 | 100.0% | 64.1% |
| 2k5qA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.56 | 38.0 | 3.26e-01 | 72.1% | 44.8% |
| 3ci0J02 | 2.10.70.20 | Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains | 0.56 | 35.0 | 3.78e-01 | 90.2% | 78.0% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 45.0 | 3.07e-01 | 91.8% | 65.0% |
| 2wliA02 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.55 | 42.0 | 3.30e-01 | 88.5% | 52.8% |
| 3bc9A01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 43.0 | 3.85e-01 | 88.5% | 59.1% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.55 | 41.0 | 3.45e-01 | 83.6% | 46.2% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 38.0 | 3.22e-01 | 75.4% | 55.4% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.55 | 42.0 | 2.97e-01 | 91.8% | 59.2% |
| 1vknA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 38.0 | 2.92e-01 | 77.0% | 80.0% |
| 1dt9A01 | 3.30.960.10 | Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 | 0.54 | 37.0 | 3.11e-01 | 72.1% | 84.8% |
| 4wtxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.66e-01 | 91.8% | 55.7% |
| 6n8eA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.53 | 45.0 | 3.03e-01 | 98.4% | 76.5% |
| 3psqB00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.53 | 40.0 | 3.06e-01 | 91.8% | 71.4% |
| 5w8mA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.53 | 40.0 | 2.95e-01 | 86.9% | 95.9% |
| 3dorA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 38.0 | 3.21e-01 | 80.3% | 61.7% |
| 2akjA03 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.50 | 41.0 | 3.44e-01 | 100.0% | 64.0% |
| 2ewvA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 40.0 | 2.79e-01 | 95.1% | 78.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3462526 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.65 | 56.0 | 3.93e-01 | 100.0% | 78.6% |
| 4012111 | 812.2.1.0 ↗ | a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain | 0.65 | 35.0 | 3.47e-01 | 96.7% | 49.2% |
| 3402677 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.65 | 34.0 | 3.50e-01 | 88.5% | 51.7% |
| 3173241 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.64 | 43.0 | 3.04e-01 | 70.5% | 27.5% |
| 4035993 | 2008.1.1.172 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26318 | 0.63 | 52.0 | 3.62e-01 | 95.1% | 31.2% |
| 4034091 | 4325.1.1.7 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 | 0.61 | 34.0 | 3.74e-01 | 80.3% | 66.0% |
| 3960619 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.61 | 49.0 | 3.91e-01 | 90.2% | 97.7% |
| 3587540 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.59 | 47.0 | 3.50e-01 | 90.2% | 59.5% |
| 4449325 | 387.1.1.24 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Toxin_35 | 0.58 | 33.0 | 3.79e-01 | 88.5% | 73.3% |
| 3959567 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.58 | 47.0 | 3.41e-01 | 93.4% | 69.5% |
| 3247542 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 43.0 | 3.73e-01 | 82.0% | 54.0% |
| 3935566 | 7581.1.1.7 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C | 0.58 | 46.0 | 3.53e-01 | 93.4% | 75.0% |
| 3596043 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 48.0 | 3.62e-01 | 100.0% | 60.6% |
| 3422000 | 11.1.5.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS | 0.57 | 43.0 | 3.64e-01 | 82.0% | 67.6% |
| 3503736 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.57 | 44.0 | 3.83e-01 | 86.9% | 80.8% |
| 3213567 | 390.1.1.7 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 | 0.57 | 42.0 | 3.41e-01 | 82.0% | 76.8% |
| 3860209 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 40.0 | 3.44e-01 | 86.9% | 46.0% |
| 4397425 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.56 | 44.0 | 3.81e-01 | 93.4% | 68.8% |
| 4930787 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.56 | 44.0 | 3.72e-01 | 90.2% | 56.4% |
| 5082551 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.55 | 43.0 | 3.46e-01 | 91.8% | 85.9% |
| 3585020 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 39.0 | 4.00e-01 | 85.2% | 81.7% |
| 4023558 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.53 | 40.0 | 2.61e-01 | 86.9% | 92.2% |
| 3892944 | 385.1.1.8 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN | 0.53 | 38.0 | 3.50e-01 | 75.4% | 85.0% |
| 5033989 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 3.88e-01 | 83.6% | 85.5% |
| 4865694 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.53 | 31.0 | 2.79e-01 | 93.4% | 42.2% |
| 3905518 | 11.1.1.587 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like | 0.52 | 44.0 | 3.65e-01 | 100.0% | 67.5% |
| 1888906 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.52 | 43.0 | 2.72e-01 | 100.0% | 53.2% |
| 3688597 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.52 | 42.0 | 3.16e-01 | 100.0% | 73.9% |
| 4034385 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 43.0 | 3.59e-01 | 95.1% | 64.5% |
| 3627810 | 3246.1.1.1 ↗ | few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM_CR | 0.52 | 37.0 | 2.90e-01 | 77.0% | 67.4% |
| 4995163 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.51 | 42.0 | 2.92e-01 | 96.7% | 60.8% |
| 4044630 | 385.1.1.8 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN | 0.51 | 34.0 | 2.95e-01 | 70.5% | 60.0% |
| 3218156 | 389.1.1.145 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29138 | 0.51 | 33.0 | 3.64e-01 | 95.1% | 91.1% |
| 3273955 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 42.0 | 3.23e-01 | 96.7% | 67.1% |
| 3743393 | 59.1.4.2 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 | 0.50 | 35.0 | 2.18e-01 | 75.4% | 51.3% |