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IMGVR_UViG_3300031280_000001-3300031280-Ga0307428_100016441

Arc-Vir

IMGVR_UViG_3300031280_000001-3300031280-Ga0307428_100016441

Quality

80.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-63
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 77.0 7.26e-01 100.0% 94.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 5.87e-01 97.8% 80.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 68.0 5.73e-01 100.0% 71.1%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 67.0 5.93e-01 100.0% 89.4%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 6.08e-01 100.0% 80.0%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 67.0 6.07e-01 100.0% 93.4%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 5.72e-01 97.8% 73.8%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 64.0 5.58e-01 100.0% 80.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 63.0 5.67e-01 100.0% 92.2%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 62.0 5.37e-01 100.0% 81.1%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 5.49e-01 100.0% 91.2%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 4.82e-01 100.0% 55.1%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.71 58.0 5.91e-01 95.6% 97.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.53e-01 100.0% 94.9%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.55e-01 100.0% 98.3%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 58.0 5.17e-01 100.0% 91.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 4.60e-01 100.0% 66.3%
2gqrA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 51.0 4.03e-01 91.1% 77.0%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.65 51.0 4.68e-01 91.1% 73.8%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 4.50e-01 91.1% 95.5%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.63 53.0 4.24e-01 100.0% 80.8%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.04e-01 93.3% 66.7%
6zlvA01 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.63 48.0 4.16e-01 88.9% 98.7%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.56e-01 100.0% 76.1%
3wx1A00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.61 47.0 3.71e-01 88.9% 40.7%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 46.0 3.97e-01 86.7% 52.1%
6iw6B01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.61 49.0 3.26e-01 100.0% 66.1%
4ncbA01 3.30.530.60 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.60 49.0 3.45e-01 91.1% 35.6%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 46.0 3.48e-01 86.7% 89.8%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 46.0 3.21e-01 86.7% 24.2%
5fkaC02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 45.0 3.93e-01 91.1% 93.8%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 40.0 3.32e-01 71.1% 54.8%
4ncdA02 2.60.40.3970 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 44.0 3.75e-01 88.9% 83.0%
4oevA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 49.0 3.45e-01 97.8% 87.1%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 3.52e-01 100.0% 54.5%
1xocA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 47.0 3.29e-01 95.6% 85.2%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 44.0 3.32e-01 93.3% 61.9%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 45.0 2.81e-01 93.3% 29.4%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.56 44.0 3.17e-01 95.6% 30.8%
6ci7A01 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 44.0 3.42e-01 100.0% 87.7%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.55 43.0 3.86e-01 93.3% 66.2%
2ownA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 42.0 2.71e-01 91.1% 38.3%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.54 45.0 2.83e-01 100.0% 65.1%
2x5fA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 43.0 3.48e-01 100.0% 66.3%
1q25A02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.53 43.0 3.13e-01 100.0% 91.7%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 42.0 3.48e-01 100.0% 78.4%
6d0aA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 43.0 3.36e-01 100.0% 71.3%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 43.0 3.43e-01 100.0% 85.4%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 39.0 2.56e-01 93.3% 59.3%
4hqnA01 2.20.100.10 Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat 0.52 36.0 3.33e-01 75.6% 90.8%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 39.0 2.59e-01 91.1% 46.2%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 38.0 2.57e-01 91.1% 46.6%
3uroR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.08e-01 86.7% 70.0%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002985 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 74.0 6.77e-01 100.0% 86.7%
3616622 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 71.0 6.43e-01 100.0% 90.5%
3233461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 71.0 6.49e-01 100.0% 93.3%
3642926 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.81 72.0 4.73e-01 100.0% 26.5%
3926207 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 73.0 6.91e-01 100.0% 94.3%
3826751 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.81 72.0 5.92e-01 100.0% 72.5%
3555931 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.81 73.0 5.32e-01 100.0% 44.3%
3601624 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 72.0 5.42e-01 100.0% 62.9%
4093836 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 71.0 6.46e-01 100.0% 83.3%
3713672 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 71.0 5.22e-01 100.0% 57.4%
4028731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 71.0 6.28e-01 100.0% 86.2%
3829476 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.80 71.0 4.66e-01 100.0% 28.0%
3608011 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 70.0 5.12e-01 100.0% 59.2%
4119295 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.78 62.0 5.02e-01 88.9% 81.2%
3183093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 66.0 4.70e-01 100.0% 49.3%
3717986 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 69.0 5.06e-01 100.0% 52.2%
3791752 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 66.0 5.89e-01 100.0% 83.1%
160765 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 64.0 5.48e-01 100.0% 81.8%
3174580 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 63.0 5.23e-01 100.0% 74.1%
4358168 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 63.0 4.86e-01 100.0% 55.5%
3843359 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.75 64.0 5.29e-01 100.0% 70.6%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 65.0 5.51e-01 100.0% 81.3%
3171604 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 64.0 5.49e-01 100.0% 86.7%
3290564 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.74 65.0 5.21e-01 100.0% 72.2%
3625911 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 63.0 5.69e-01 100.0% 86.2%
4483091 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 62.0 4.84e-01 100.0% 62.9%
3561094 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 63.0 5.40e-01 100.0% 81.3%
531 4.1.1.281 beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.74 62.0 5.37e-01 100.0% 81.1%
3736411 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.74 63.0 5.20e-01 100.0% 74.1%
157323 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.49e-01 100.0% 91.2%
3504086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.02e-01 100.0% 85.6%
4515863 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 60.0 4.67e-01 100.0% 49.1%
3257276 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 61.0 4.53e-01 100.0% 48.0%
3783847 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 62.0 5.54e-01 100.0% 89.2%
3236896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.39e-01 100.0% 81.4%
5032782 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.72 54.0 4.39e-01 84.4% 48.9%
3928711 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.08e-01 100.0% 57.6%
3589730 4.1.1.252 beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.72 62.0 5.16e-01 100.0% 80.0%
4140958 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 59.0 5.15e-01 100.0% 68.0%
3638043 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.71 64.0 3.87e-01 100.0% 24.3%
3557677 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 61.0 5.33e-01 100.0% 87.1%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 60.0 5.43e-01 100.0% 93.8%
3503780 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 61.0 5.45e-01 100.0% 83.1%
3494785 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.46e-01 100.0% 78.5%
3575253 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 58.0 5.04e-01 93.3% 84.3%
3607307 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 58.0 5.17e-01 100.0% 87.1%
4493776 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 58.0 5.10e-01 97.8% 97.1%
3214234 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.40e-01 100.0% 93.3%
3207383 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 61.0 3.66e-01 100.0% 22.3%
3710561 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 57.0 5.21e-01 100.0% 93.8%
3475756 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 56.0 4.89e-01 100.0% 77.3%
3631248 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.68 58.0 4.29e-01 100.0% 69.6%
3611694 219.1.1.19 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C54 0.68 58.0 3.53e-01 100.0% 21.4%
3910727 4.1.1.353 beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.66 55.0 4.98e-01 100.0% 80.0%
3192402 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 3.84e-01 100.0% 50.3%
3232165 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 55.0 4.48e-01 100.0% 98.9%
5007378 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 50.0 4.73e-01 86.7% 74.5%
3663538 1129.1.1.1 a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 0.65 48.0 3.96e-01 84.4% 43.3%
515 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 53.0 4.33e-01 100.0% 97.8%
4631894 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.64 55.0 4.15e-01 100.0% 66.1%
3615649 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.22e-01 100.0% 81.8%
3585016 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 50.0 4.68e-01 91.1% 90.0%
3595472 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 50.0 3.56e-01 88.9% 57.1%
3286168 881.1.1.27 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF7373_C 0.63 49.0 3.48e-01 91.1% 28.4%
4881914 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.62 48.0 3.22e-01 91.1% 38.3%
4972785 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 47.0 4.59e-01 88.9% 89.8%
1807154 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 48.0 3.48e-01 100.0% 53.4%
3266298 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 45.0 3.33e-01 91.1% 53.0%
4945471 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 46.0 4.26e-01 100.0% 83.1%
3675472 5.1.5.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN 0.57 45.0 2.98e-01 95.6% 31.5%
3692668 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.62e-01 91.1% 26.7%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.56 38.0 2.81e-01 73.3% 27.9%
3432908 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 45.0 2.77e-01 100.0% 25.6%
4544568 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.56 44.0 3.42e-01 91.1% 80.9%
5037801 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.63e-01 97.8% 83.1%
3404871 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.55 43.0 3.33e-01 91.1% 80.9%
3441981 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.55 43.0 3.12e-01 100.0% 51.5%
3550970 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.54 45.0 3.42e-01 95.6% 70.0%
3785687 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.53 40.0 3.28e-01 100.0% 65.2%
3239098 5.1.1.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › PF27563 0.53 42.0 3.16e-01 100.0% 69.7%
1822927 227.1.1.2 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 40.0 2.83e-01 91.1% 71.2%