←Back to structures
IMGVR_UViG_3300031280_000001-3300031280-Ga0307428_10001646
Arc-VirIMGVR_UViG_3300031280_000001-3300031280-Ga0307428_10001646
Identity
- Kingdom:
- archaea
Quality
77.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-166
Domain cluster:
rep: IMGVR_UViG_3300031351_000395-3300031351-Ga0307427_10050503__D55-145
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nx9A02 | 2.60.40.4390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.76 | 68.0 | 6.15e-01 | 100.0% | 86.8% |
| 3sqnB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 37.0 | 4.34e-01 | 70.0% | 75.4% |
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.66 | 38.0 | 4.22e-01 | 74.4% | 70.8% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 47.0 | 5.21e-01 | 100.0% | 97.1% |
| 6m3aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 44.0 | 4.91e-01 | 97.8% | 98.5% |
| 3cjsA00 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.62 | 37.0 | 4.34e-01 | 100.0% | 89.7% |
| 3es1A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 37.0 | 3.33e-01 | 100.0% | 42.1% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.61 | 41.0 | 4.67e-01 | 82.2% | 96.9% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.60 | 48.0 | 4.75e-01 | 100.0% | 83.0% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 37.0 | 3.64e-01 | 97.8% | 56.6% |
| 2lw3A00 | 2.60.40.2880 | Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain | 0.60 | 41.0 | 4.13e-01 | 100.0% | 71.1% |
| 2mngA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 38.0 | 3.38e-01 | 97.8% | 44.3% |
| 1o5uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 36.0 | 3.66e-01 | 97.8% | 62.5% |
| 2b8mA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 39.0 | 3.66e-01 | 100.0% | 58.7% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 36.0 | 3.19e-01 | 95.6% | 44.0% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 35.0 | 3.40e-01 | 98.9% | 55.8% |
| 1gqgC02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 36.0 | 2.87e-01 | 100.0% | 31.2% |
| 3l9bA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.54 | 41.0 | 3.73e-01 | 83.3% | 100.0% |
| 2vecA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 40.0 | 3.64e-01 | 92.2% | 58.1% |
| 2j0wA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 40.0 | 4.32e-01 | 100.0% | 98.7% |
| 1tq5A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 40.0 | 3.61e-01 | 91.1% | 58.4% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 40.0 | 3.65e-01 | 94.4% | 59.8% |
| 1ra6A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 46.0 | 4.41e-01 | 100.0% | 84.0% |
| 6grqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 4.13e-01 | 100.0% | 87.5% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 34.0 | 2.95e-01 | 100.0% | 38.7% |
| 2p17A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 38.0 | 2.92e-01 | 83.3% | 95.2% |
| 2amyA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.51 | 43.0 | 4.18e-01 | 95.6% | 88.2% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3166067 | 3019.1.1.7 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_domII | 0.83 | 77.0 | 7.28e-01 | 100.0% | 96.2% |
| 3311334 | 310.1.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N | 0.76 | 47.0 | 4.36e-01 | 74.4% | 51.4% |
| 3759359 | 3019.1.1.0 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain | 0.69 | 62.0 | 5.81e-01 | 100.0% | 90.0% |
| 4022173 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.67 | 35.0 | 4.08e-01 | 75.6% | 70.8% |
| 5057765 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.66 | 43.0 | 4.56e-01 | 85.6% | 75.0% |
| 4961736 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.64 | 38.0 | 3.50e-01 | 97.8% | 46.1% |
| 5077049 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.62 | 43.0 | 4.64e-01 | 98.9% | 86.7% |
| 4010516 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.61 | 38.0 | 3.31e-01 | 100.0% | 38.6% |
| 3594453 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.61 | 44.0 | 3.21e-01 | 74.4% | 97.4% |
| 5077501 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.61 | 50.0 | 5.11e-01 | 100.0% | 94.1% |
| 5003975 | 101.1.2.944 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26486 | 0.61 | 35.0 | 3.97e-01 | 76.7% | 76.9% |
| 3587558 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 36.0 | 4.01e-01 | 80.0% | 75.7% |
| 3615529 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.61 | 43.0 | 3.32e-01 | 73.3% | 100.0% |
| 3934202 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.60 | 54.0 | 4.64e-01 | 100.0% | 79.3% |
| 4928400 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.60 | 45.0 | 4.77e-01 | 100.0% | 92.4% |
| 3590297 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 37.0 | 3.66e-01 | 80.0% | 56.0% |
| 4826122 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.59 | 53.0 | 4.73e-01 | 100.0% | 93.8% |
| 5027879 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.59 | 46.0 | 4.95e-01 | 96.7% | 100.0% |
| 5071748 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.59 | 46.0 | 5.06e-01 | 87.8% | 100.0% |
| 3807514 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.59 | 42.0 | 2.98e-01 | 75.6% | 44.7% |
| 3969466 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.58 | 36.0 | 3.33e-01 | 100.0% | 46.7% |
| 3725555 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.58 | 38.0 | 2.98e-01 | 100.0% | 31.6% |
| 3909928 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 51.0 | 5.16e-01 | 100.0% | 97.8% |
| 1030921 | 10.12.1.13 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin | 0.58 | 40.0 | 3.48e-01 | 100.0% | 46.7% |
| 4950591 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 40.0 | 3.54e-01 | 100.0% | 50.0% |
| 4090279 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.57 | 48.0 | 4.98e-01 | 100.0% | 97.6% |
| 2325417 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.57 | 44.0 | 4.47e-01 | 92.2% | 86.2% |
| 2417755 | 10.12.1.13 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin | 0.57 | 40.0 | 3.46e-01 | 100.0% | 46.8% |
| 3450997 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.56 | 42.0 | 4.13e-01 | 91.1% | 73.0% |
| 3782093 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.56 | 43.0 | 4.46e-01 | 91.1% | 89.4% |
| 3260113 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.56 | 49.0 | 4.67e-01 | 100.0% | 81.8% |
| 3727831 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.56 | 43.0 | 4.42e-01 | 93.3% | 88.2% |
| 4327417 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 45.0 | 4.23e-01 | 91.1% | 73.0% |
| 4088887 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 45.0 | 4.28e-01 | 91.1% | 75.5% |
| 4659266 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 45.0 | 4.26e-01 | 91.1% | 84.5% |
| 331943 | 10.12.1.27 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 | 0.55 | 35.0 | 3.24e-01 | 98.9% | 48.7% |
| 5006901 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.54 | 37.0 | 3.52e-01 | 88.9% | 59.1% |
| 3989153 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 34.0 | 3.66e-01 | 82.2% | 76.0% |
| 5043392 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.53 | 37.0 | 4.30e-01 | 73.3% | 100.0% |
| 3590255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.71e-01 | 81.1% | 75.3% |
| 4970098 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 42.0 | 3.99e-01 | 91.1% | 73.6% |
| 4593987 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 42.0 | 3.65e-01 | 91.1% | 63.1% |
| 4093321 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 41.0 | 3.89e-01 | 91.1% | 70.4% |
| 5034952 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.51 | 37.0 | 2.72e-01 | 77.8% | 47.5% |
| 4099164 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 41.0 | 3.69e-01 | 91.1% | 61.9% |
| 3662636 | 10.12.1.14 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C | 0.51 | 38.0 | 2.74e-01 | 82.2% | 82.3% |
D2
high
residues 205-294
Domain cluster:
rep: IMGVR_UViG_3300031351_000395-3300031351-Ga0307427_10050502__D112-199