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IMGVR_UViG_3300031280_000041-3300031280-Ga0307428_10011646
Arc-VirIMGVR_UViG_3300031280_000041-3300031280-Ga0307428_10011646
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-122
Domain cluster:
rep: JN051154.1__AER59760.1__clP1_001__00001__D30-123
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i6tA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.61 | 46.0 | 3.89e-01 | 92.3% | 47.4% |
| 4mcwA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 47.0 | 3.80e-01 | 96.7% | 69.4% |
| 2gwgA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.54 | 37.0 | 2.57e-01 | 71.4% | 74.7% |
| 1qmnA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 32.0 | 2.89e-01 | 85.7% | 38.6% |
| 5ly3A02 | 3.30.420.570 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 47.0 | 3.54e-01 | 100.0% | 56.7% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.52 | 37.0 | 3.05e-01 | 97.8% | 42.0% |
| 3cskA03 | 3.30.70.2600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.41e-01 | 91.2% | 71.1% |
| 3icaB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 38.0 | 3.05e-01 | 83.5% | 70.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3615029 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.63 | 45.0 | 4.57e-01 | 89.0% | 76.7% |
| 3700817 | 304.9.1.107 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › FAZ1_cons | 0.62 | 44.0 | 4.46e-01 | 91.2% | 75.6% |
| 3611231 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.60 | 44.0 | 4.27e-01 | 91.2% | 68.6% |
| 4681401 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.56 | 38.0 | 3.61e-01 | 90.1% | 56.5% |
| 3580646 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.55 | 26.0 | 3.43e-01 | 75.8% | 95.0% |
| 4882600 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.53 | 46.0 | 3.95e-01 | 98.9% | 92.9% |
| 4947735 | 2004.1.1.1209 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrA_inter | 0.53 | 45.0 | 2.72e-01 | 96.7% | 53.9% |
| 5043060 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.52 | 43.0 | 3.43e-01 | 96.7% | 93.8% |
| 3310179 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.52 | 34.0 | 3.31e-01 | 86.8% | 60.0% |
| 2106047 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.52 | 42.0 | 3.61e-01 | 89.0% | 89.7% |