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IMGVR_UViG_3300031650_000024-3300031650-Ga0315539_100378220

Arc-Vir

IMGVR_UViG_3300031650_000024-3300031650-Ga0315539_100378220

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-63
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 45.0 4.25e-01 82.8% 53.5%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 52.0 3.28e-01 86.2% 67.4%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 46.0 3.22e-01 72.4% 53.2%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 49.0 3.51e-01 82.8% 26.5%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 53.0 4.43e-01 93.1% 61.0%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 53.0 4.48e-01 94.8% 63.7%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 52.0 3.63e-01 94.8% 28.5%
2p35A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 46.0 3.33e-01 86.2% 25.9%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.64 47.0 3.17e-01 81.0% 49.8%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.63 35.0 3.96e-01 77.6% 73.2%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.63 50.0 4.35e-01 94.8% 56.7%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 51.0 3.22e-01 91.4% 16.9%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 47.0 4.12e-01 86.2% 60.8%
3mb5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 45.0 3.26e-01 81.0% 28.5%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 3.68e-01 82.8% 43.0%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 45.0 3.73e-01 82.8% 45.5%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 48.0 3.09e-01 89.7% 17.9%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.60 48.0 2.86e-01 91.4% 40.3%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 45.0 3.67e-01 82.8% 45.1%
2vpzB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 49.0 3.79e-01 93.1% 40.0%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 3.62e-01 82.8% 44.3%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.58 51.0 4.02e-01 100.0% 53.8%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 42.0 3.08e-01 81.0% 87.0%
2ougA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.57 39.0 2.98e-01 77.6% 29.8%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 50.0 3.80e-01 98.3% 70.7%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 51.0 3.86e-01 100.0% 50.4%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 48.0 4.30e-01 94.8% 70.7%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 51.0 3.73e-01 100.0% 50.3%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.57 42.0 3.20e-01 81.0% 70.6%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 30.0 3.43e-01 72.4% 65.8%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 41.0 2.75e-01 84.5% 35.0%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 47.0 4.05e-01 93.1% 89.0%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 41.0 3.04e-01 81.0% 54.0%
1lqlA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 46.0 3.89e-01 98.3% 72.8%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 48.0 3.43e-01 98.3% 98.8%
6kd0A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 2.62e-01 84.5% 32.8%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.58e-01 93.1% 54.8%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 47.0 4.03e-01 96.6% 74.5%
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 41.0 2.85e-01 91.4% 65.3%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 47.0 3.64e-01 100.0% 73.1%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 39.0 2.50e-01 82.8% 29.6%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.25e-01 82.8% 97.2%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 2.90e-01 100.0% 40.7%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.14e-01 100.0% 86.6%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 42.0 2.79e-01 89.7% 44.9%
1j5wB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 37.0 2.68e-01 82.8% 38.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3479176 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.73 38.0 3.41e-01 72.4% 36.3%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.72 53.0 3.37e-01 81.0% 56.6%
3255418 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.68 54.0 3.33e-01 91.4% 14.8%
4935587 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.66 49.0 3.58e-01 79.3% 29.4%
4996610 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 45.0 3.96e-01 84.5% 46.7%
None 0.66 49.0 3.45e-01 82.8% 25.8%
4931813 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.65 47.0 3.44e-01 77.6% 28.5%
5004023 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.65 47.0 3.40e-01 79.3% 26.1%
4961364 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.65 46.0 3.36e-01 77.6% 26.9%
3932435 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.65 52.0 3.31e-01 93.1% 44.8%
4938781 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.64 48.0 3.52e-01 82.8% 29.7%
5022277 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 50.0 3.78e-01 82.8% 36.9%
5025539 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.64 49.0 3.43e-01 86.2% 25.0%
4538250 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.64 49.0 3.73e-01 82.8% 35.6%
5030500 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 49.0 3.65e-01 82.8% 34.3%
5058021 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.63 48.0 4.09e-01 100.0% 48.6%
4979212 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.63 49.0 3.10e-01 89.7% 15.9%
4351239 4967.1.1.6 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.62 48.0 3.71e-01 84.5% 40.8%
4187457 4967.1.1.6 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.62 49.0 3.71e-01 84.5% 40.8%
None 0.61 43.0 3.11e-01 77.6% 24.5%
3967659 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.60 42.0 3.02e-01 75.9% 23.6%
None 0.60 46.0 3.31e-01 87.9% 27.0%
4945568 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 46.0 3.42e-01 82.8% 33.8%
4629529 2002.1.1.420 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, PF25918 0.59 44.0 2.67e-01 79.3% 21.9%
4961538 2002.1.1.256 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C 0.59 44.0 2.65e-01 79.3% 21.4%
4940944 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 46.0 3.53e-01 82.8% 38.4%
4228205 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.59 49.0 3.82e-01 100.0% 40.0%
3959362 101.1.1.531 alpha arrays › HTH › HTH › Three-helical HTH › WS_DGAT_cat 0.59 49.0 3.64e-01 91.4% 36.7%
5056319 177.1.1.0 alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.58 45.0 3.27e-01 87.9% 61.1%
5056727 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.58 49.0 3.43e-01 96.6% 44.9%
5074340 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.58 47.0 3.71e-01 100.0% 40.7%
3942790 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.58 45.0 4.42e-01 96.6% 78.5%
5047206 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.58 50.0 3.73e-01 98.3% 70.7%
3740450 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.57 46.0 3.99e-01 87.9% 60.0%
4948501 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.57 45.0 3.72e-01 100.0% 44.4%
3982740 5086.1.1.190 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.57 44.0 3.07e-01 84.5% 40.0%
4541164 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.57 47.0 3.22e-01 93.1% 42.7%
5070432 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.57 47.0 3.38e-01 94.8% 61.7%
3799677 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.57 41.0 2.65e-01 77.6% 17.5%
5045621 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.57 50.0 3.69e-01 98.3% 68.0%
3969252 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.57 50.0 3.85e-01 100.0% 53.3%
4933810 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.56 50.0 3.78e-01 100.0% 51.0%
4966168 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 46.0 2.87e-01 93.1% 67.5%
5037750 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.56 48.0 3.36e-01 96.6% 46.2%
4972556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.45e-01 87.9% 50.6%
4021847 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.56 47.0 3.05e-01 100.0% 54.7%
3728856 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.55 46.0 3.22e-01 98.3% 76.4%
5045913 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 45.0 3.55e-01 100.0% 64.8%
4946616 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 42.0 3.76e-01 87.9% 60.0%
4674811 304.48.1.17 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 0.54 49.0 3.03e-01 100.0% 58.8%
5076659 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 47.0 3.64e-01 100.0% 52.9%
4968507 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 48.0 3.64e-01 100.0% 68.6%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 44.0 3.79e-01 100.0% 56.8%
5072529 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 41.0 3.73e-01 91.4% 64.4%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.53 41.0 3.60e-01 96.6% 54.3%
3612987 206.1.3.12 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.53 47.0 3.43e-01 100.0% 43.8%
5031862 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 46.0 3.24e-01 100.0% 31.8%
4972532 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.53 43.0 3.73e-01 98.3% 57.8%
4939497 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.52 38.0 3.10e-01 81.0% 51.2%
5007619 3010.1.1.2 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.52 36.0 2.91e-01 72.4% 45.5%
4990821 7571.1.1.1 a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.52 44.0 2.83e-01 94.8% 41.5%
10062 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.52 42.0 2.77e-01 89.7% 44.0%
5078525 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 38.0 2.89e-01 79.3% 68.1%
3747930 6006.1.1.4 extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF28678 0.50 41.0 3.76e-01 96.6% 76.2%