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IMGVR_UViG_3300031760_000087-3300031760-Ga0326513_1000014363
Arc-VirIMGVR_UViG_3300031760_000087-3300031760-Ga0326513_1000014363
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-75
Domain cluster:
rep: IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034366__D3-97
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 55.0 | 6.26e-01 | 74.0% | 94.5% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 54.0 | 5.96e-01 | 74.0% | 89.7% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 63.0 | 5.91e-01 | 100.0% | 74.4% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.75 | 51.0 | 5.34e-01 | 71.2% | 77.3% |
| 3ic8A01 | 3.40.30.110 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.75 | 58.0 | 4.37e-01 | 100.0% | 34.5% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 50.0 | 4.69e-01 | 79.5% | 58.9% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.72 | 51.0 | 5.02e-01 | 100.0% | 70.1% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 46.0 | 5.28e-01 | 79.5% | 96.0% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.70 | 47.0 | 5.25e-01 | 75.3% | 92.6% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 50.0 | 5.20e-01 | 98.6% | 80.9% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 50.0 | 5.30e-01 | 76.7% | 96.9% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.69 | 43.0 | 5.10e-01 | 94.5% | 97.9% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.68 | 45.0 | 5.07e-01 | 75.3% | 90.7% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 49.0 | 5.00e-01 | 100.0% | 77.5% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.67 | 60.0 | 5.53e-01 | 100.0% | 76.3% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 47.0 | 5.19e-01 | 100.0% | 96.4% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 53.0 | 5.60e-01 | 95.9% | 100.0% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 46.0 | 5.06e-01 | 100.0% | 96.6% |
| 6fopA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.62 | 47.0 | 3.32e-01 | 80.8% | 49.6% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 44.0 | 4.46e-01 | 100.0% | 75.3% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.62 | 52.0 | 3.16e-01 | 91.8% | 35.5% |
| 2kgtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 48.0 | 4.86e-01 | 84.9% | 94.4% |
| 1zxzB00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.61 | 49.0 | 3.71e-01 | 90.4% | 79.1% |
| 1szzA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.58 | 46.0 | 3.62e-01 | 90.4% | 83.0% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.58 | 42.0 | 3.60e-01 | 100.0% | 46.3% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.57 | 46.0 | 3.82e-01 | 90.4% | 93.4% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.57 | 47.0 | 3.83e-01 | 90.4% | 97.1% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 43.0 | 4.63e-01 | 100.0% | 96.8% |
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.56 | 44.0 | 3.47e-01 | 84.9% | 75.0% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 45.0 | 3.44e-01 | 90.4% | 90.4% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 38.0 | 3.59e-01 | 71.2% | 61.5% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.54 | 44.0 | 3.78e-01 | 89.0% | 93.2% |
| 2bvbA00 | 2.60.120.710 | Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 | 0.54 | 45.0 | 3.77e-01 | 97.3% | 85.4% |
| 1o97C00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 46.0 | 3.26e-01 | 100.0% | 72.9% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 42.0 | 2.99e-01 | 90.4% | 36.9% |
| 1n02A00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.53 | 45.0 | 4.04e-01 | 94.5% | 87.3% |
| 2l2fA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.53 | 44.0 | 3.94e-01 | 94.5% | 88.0% |
| 5ih0A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 42.0 | 3.87e-01 | 86.3% | 94.6% |
| 3jcuO01 | 2.40.160.30 | Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor | 0.52 | 43.0 | 3.34e-01 | 95.9% | 90.3% |
| 3ebkB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 42.0 | 3.24e-01 | 90.4% | 66.5% |
| 3ic9A03 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 45.0 | 3.81e-01 | 100.0% | 95.1% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.51 | 42.0 | 3.14e-01 | 91.8% | 52.7% |
| 6aqgA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 39.0 | 3.18e-01 | 84.9% | 72.3% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.50 | 40.0 | 3.11e-01 | 90.4% | 98.9% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4079197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.85 | 65.0 | 6.20e-01 | 100.0% | 69.4% |
| 4589595 | 4.1.1.447 ↗ | beta barrels › SH3 › SH3 › SH3 › PF28065 | 0.81 | 65.0 | 6.90e-01 | 100.0% | 95.4% |
| 4026408 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.81 | 63.0 | 5.59e-01 | 100.0% | 60.0% |
| 3507639 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.79 | 61.0 | 6.26e-01 | 100.0% | 87.1% |
| 3989574 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 60.0 | 5.73e-01 | 98.6% | 70.6% |
| 4041376 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.77 | 64.0 | 6.19e-01 | 100.0% | 81.2% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.75 | 60.0 | 6.18e-01 | 100.0% | 89.9% |
| 3924377 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 53.0 | 5.97e-01 | 98.6% | 100.0% |
| 3578208 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 51.0 | 5.84e-01 | 71.2% | 96.4% |
| 3973076 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.74 | 58.0 | 4.03e-01 | 100.0% | 26.5% |
| 5031673 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 66.0 | 5.80e-01 | 100.0% | 77.1% |
| 3736175 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 57.0 | 5.45e-01 | 100.0% | 75.3% |
| 3840679 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.70 | 48.0 | 4.40e-01 | 100.0% | 54.7% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 50.0 | 5.46e-01 | 75.3% | 94.8% |
| 3210707 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.69 | 49.0 | 5.26e-01 | 74.0% | 100.0% |
| 1114686 | 4.1.1.8 ↗ | beta barrels › SH3 › SH3 › SH3 › IN_DBD_C | 0.69 | 47.0 | 5.23e-01 | 78.1% | 92.9% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 47.0 | 3.35e-01 | 98.6% | 24.2% |
| 3926118 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.68 | 53.0 | 5.72e-01 | 100.0% | 100.0% |
| 3625264 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 47.0 | 4.28e-01 | 98.6% | 54.7% |
| 3196111 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.68 | 49.0 | 3.14e-01 | 75.3% | 25.7% |
| 3480200 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.68 | 49.0 | 4.90e-01 | 76.7% | 100.0% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 48.0 | 3.45e-01 | 97.3% | 24.9% |
| 3238405 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 48.0 | 5.33e-01 | 98.6% | 100.0% |
| 3398496 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.66 | 46.0 | 5.10e-01 | 95.9% | 96.4% |
| 1408049 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.66 | 47.0 | 3.82e-01 | 97.3% | 39.7% |
| 3642679 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.66 | 47.0 | 4.21e-01 | 76.7% | 76.9% |
| 3928430 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.66 | 52.0 | 5.29e-01 | 100.0% | 88.6% |
| 567 | 4.1.1.48 ↗ | beta barrels › SH3 › SH3 › SH3 › DHFR_2 | 0.65 | 47.0 | 5.11e-01 | 100.0% | 98.2% |
| 157526 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 50.0 | 5.37e-01 | 93.2% | 100.0% |
| 3964422 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 47.0 | 3.67e-01 | 79.5% | 90.0% |
| 4972851 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.63 | 56.0 | 3.64e-01 | 100.0% | 23.7% |
| 3192398 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.62 | 52.0 | 3.15e-01 | 91.8% | 31.3% |
| 3591224 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 41.0 | 4.73e-01 | 74.0% | 100.0% |
| 4426276 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 50.0 | 5.13e-01 | 97.3% | 94.3% |
| 3638713 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.62 | 52.0 | 3.12e-01 | 91.8% | 32.2% |
| None | — | 0.62 | 55.0 | 3.49e-01 | 100.0% | 20.3% | |
| 5060347 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.62 | 54.0 | 3.29e-01 | 100.0% | 15.0% |
| 4224041 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.61 | 48.0 | 4.79e-01 | 100.0% | 82.7% |
| 3710708 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.60 | 48.0 | 3.60e-01 | 90.4% | 68.3% |
| 3174821 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.60 | 50.0 | 3.21e-01 | 89.0% | 32.3% |
| 3279614 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.60 | 49.0 | 3.89e-01 | 90.4% | 46.5% |
| 3969959 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 53.0 | 4.93e-01 | 97.3% | 82.2% |
| 3298989 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 48.0 | 4.16e-01 | 100.0% | 57.3% |
| 5020252 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.60 | 46.0 | 4.01e-01 | 100.0% | 52.5% |
| 4995784 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 48.0 | 4.81e-01 | 100.0% | 89.3% |
| 3217772 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 52.0 | 4.99e-01 | 100.0% | 90.6% |
| 4093139 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.57 | 44.0 | 4.32e-01 | 100.0% | 80.8% |
| 1144799 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.56 | 50.0 | 3.89e-01 | 100.0% | 95.6% |
| 4458401 | 375.1.1.17 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1f | 0.56 | 48.0 | 3.32e-01 | 100.0% | 28.0% |
| 5060716 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.55 | 44.0 | 3.73e-01 | 90.4% | 73.1% |
| 4186983 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.55 | 40.0 | 4.06e-01 | 97.3% | 80.0% |
| 3219839 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 47.0 | 2.99e-01 | 97.3% | 26.8% |