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IMGVR_UViG_3300031800_000225-3300031800-Ga0310122_100160351

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300031800_000225-3300031800-Ga0310122_100160351 ↗
Kingdom:: archaea

Quality

81.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-61

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vxzA02	1.10.10.1490	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.67	56.0	5.00e-01	100.0%	90.8%
1wj5A01	1.10.10.980	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain	0.61	51.0	4.41e-01	100.0%	92.9%
1fnnB03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	48.0	4.12e-01	100.0%	70.9%
2f33A03	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.56	46.0	4.13e-01	100.0%	88.5%
5hvqC01	3.90.1150.220	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 ›	0.55	44.0	4.13e-01	100.0%	95.0%

ECOD (22)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5080760	101.1.2.894 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF2240	0.67	58.0	5.08e-01	100.0%	67.8%
4966294	101.1.2.894 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF2240	0.67	58.0	5.21e-01	100.0%	76.2%
5064533	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	58.0	5.41e-01	100.0%	78.6%
5050212	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	56.0	4.83e-01	100.0%	65.3%
4932270	101.1.2.894 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF2240	0.65	56.0	4.72e-01	100.0%	61.0%
4928210	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.63	54.0	4.63e-01	100.0%	67.4%
3895346	101.1.2.575 ↗	alpha arrays › HTH › HTH › winged helix domain › PF25894	0.61	52.0	4.27e-01	100.0%	60.9%
3871438	108.1.1.69 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › SPEF2_C	0.61	50.0	3.33e-01	100.0%	27.3%
3647007	101.1.1.65 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4	0.60	47.0	4.68e-01	87.7%	90.0%
4982868	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	49.0	4.35e-01	100.0%	77.6%
3569331	108.1.1.69 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › SPEF2_C	0.56	47.0	3.79e-01	100.0%	56.8%
5044560	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	47.0	3.22e-01	100.0%	25.2%
3610225	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.56	41.0	2.71e-01	80.7%	25.8%
3781893	101.1.2.147 ↗	alpha arrays › HTH › HTH › winged helix domain › ORC4_C	0.55	46.0	3.53e-01	100.0%	79.9%
5078990	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	46.0	4.55e-01	98.2%	96.7%
5008980	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	42.0	3.61e-01	98.2%	51.4%
4955755	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	43.0	4.29e-01	100.0%	91.7%
5016955	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	45.0	3.71e-01	100.0%	61.8%
3495994	101.1.2.304 ↗	alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase	0.52	43.0	4.30e-01	100.0%	98.3%
3593964	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.51	42.0	3.06e-01	100.0%	56.8%
3271019	101.1.2.113 ↗	alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279	0.51	41.0	3.35e-01	100.0%	46.4%
3627495	101.1.2.304 ↗	alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase	0.50	43.0	4.24e-01	100.0%	98.3%

D2 high residues 114-170

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2q1sA02	3.90.25.10	Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1	0.67	49.0	4.17e-01	80.7%	48.4%
4nesA01	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.62	54.0	3.70e-01	100.0%	59.1%
3ujpA02	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.60	52.0	4.18e-01	100.0%	58.3%
4v19S00	3.30.420.80	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14	0.60	43.0	3.22e-01	77.2%	35.0%
1h5qA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.59	50.0	3.31e-01	100.0%	61.9%
6hxqA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.57	40.0	3.20e-01	78.9%	33.3%
3zy2A01	3.40.50.11340	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	40.0	2.90e-01	80.7%	65.3%
6xehA01	3.40.50.11230	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	47.0	3.83e-01	100.0%	67.6%
1ydwA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.54	40.0	3.26e-01	98.2%	38.3%
3kw2B02	3.40.1280.10	Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain	0.53	44.0	3.26e-01	100.0%	74.1%
1ls1A01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.53	43.0	3.73e-01	91.2%	96.6%
1h7mA00	3.30.1330.30	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12	0.52	43.0	3.64e-01	93.0%	55.7%
3smvA02	1.10.150.750	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.51	39.0	3.57e-01	82.5%	85.7%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3257173	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.84	75.0	5.09e-01	100.0%	59.1%
4890994	2004.1.1.735 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MT	0.83	73.0	4.73e-01	100.0%	22.8%
4948281	2004.1.1.196 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22	0.79	69.0	5.09e-01	100.0%	59.6%
4890969	2004.1.1.735 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MT	0.76	69.0	4.41e-01	100.0%	35.2%
5044535	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.66	48.0	3.59e-01	84.2%	30.3%
3901459	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.66	50.0	2.83e-01	84.2%	20.0%
4998911	2003.1.10.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain	0.61	43.0	3.85e-01	77.2%	51.8%
5052297	876.1.1.0 ↗	a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin	0.60	48.0	4.18e-01	87.7%	60.0%
3932592	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.58	42.0	3.34e-01	80.7%	68.1%
5063713	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.58	40.0	3.97e-01	71.9%	86.7%
3398349	213.1.1.0 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat)	0.58	40.0	3.19e-01	80.7%	33.6%
3551542	873.1.1.5 ↗	a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB	0.57	45.0	3.22e-01	91.2%	86.3%
5063062	221.1.1.48 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_4	0.57	41.0	3.25e-01	77.2%	72.0%
3493244	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.55	45.0	2.85e-01	94.7%	94.2%