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IMGVR_UViG_3300031857_004037-3300031857-Ga0315909_100099191

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300031857_004037-3300031857-Ga0315909_100099191 ↗
Kingdom:: archaea

Quality

77.9 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-138

PDB

Domain cluster: rep: IMGVR_UViG_3300000151_000068-3300000151-SI53jan11_200mDRAFT_10025342__D35-172

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wfwA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.81	42.0	5.71e-01	74.3%	98.3%
2wfwB02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.76	43.0	5.56e-01	77.9%	95.5%
1ib8A02	2.30.30.180	Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain	0.69	28.0	3.62e-01	75.2%	62.7%
2id0A01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.68	39.0	4.51e-01	74.3%	79.5%
2qcpX01	2.40.50.320	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF	0.68	43.0	5.17e-01	74.3%	97.3%
8aasC01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.67	45.0	4.76e-01	93.8%	76.5%
1ckmA02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.67	38.0	4.35e-01	95.6%	75.9%
5l37C00	2.40.50.220	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml	0.66	49.0	5.57e-01	93.8%	100.0%
1v1qA00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.66	45.0	4.60e-01	70.8%	91.8%
1wydA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.63	44.0	4.59e-01	74.3%	78.4%
3nswA00	2.40.50.780	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.62	45.0	4.64e-01	97.3%	80.2%
3go5A02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.58	37.0	4.36e-01	90.3%	92.4%
2vnuD01	2.40.50.690	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.54	38.0	3.97e-01	72.6%	80.6%
1n7oA03	2.60.220.10	Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal	0.52	25.0	2.81e-01	71.7%	55.3%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3711866	2.1.1.106 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PRS7_OB	0.78	47.0	4.93e-01	77.0%	65.7%
4357396	2.1.1.84 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N	0.76	48.0	4.90e-01	87.6%	65.5%
4996351	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.73	43.0	4.87e-01	87.6%	76.1%
4592273	2.1.1.84 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N	0.72	42.0	4.14e-01	74.3%	55.0%
3992385	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.71	44.0	5.19e-01	87.6%	88.7%
3619972	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.69	43.0	5.28e-01	99.1%	100.0%
5012551	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.69	40.0	4.71e-01	74.3%	82.5%
4882592	2.1.1.1 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23	0.68	49.0	4.46e-01	73.5%	67.8%
2579126	2.1.1.1 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23	0.68	48.0	4.38e-01	71.7%	68.1%
3797107	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.68	46.0	4.98e-01	85.8%	82.1%
5081144	2.1.1.15 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon	0.67	42.0	4.79e-01	74.3%	83.5%
3399810	2.1.1.44 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2	0.67	46.0	5.12e-01	85.8%	88.9%
1933605	2.16.1.1 ↗	beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL	0.66	49.0	5.57e-01	93.8%	100.0%
5043072	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.66	37.0	4.56e-01	99.1%	88.6%
4970158	2.1.1.15 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon	0.66	45.0	4.41e-01	77.0%	65.0%
3953025	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.66	45.0	5.24e-01	92.0%	100.0%
4065350	2.1.1.57 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N	0.65	42.0	5.00e-01	75.2%	98.7%
5062588	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.65	43.0	4.67e-01	75.2%	80.0%
3098017	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.64	43.0	4.37e-01	93.8%	69.0%
3520070	2.1.1.41 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C	0.63	44.0	4.43e-01	71.7%	80.0%
4606349	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.61	46.0	4.97e-01	90.3%	93.7%
4015435	2.1.1.44 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2	0.61	44.0	4.80e-01	85.8%	88.4%
3268888	2.1.1.44 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2	0.61	45.0	5.02e-01	85.8%	96.7%
3477693	2.1.1.41 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C	0.60	43.0	4.19e-01	75.2%	76.8%
3514608	2.1.1.41 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C	0.59	43.0	4.18e-01	75.2%	76.0%
5023128	2.1.1.15 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon	0.59	44.0	4.35e-01	94.7%	73.3%
3822461	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.58	41.0	4.59e-01	72.6%	96.5%
3455977	2.1.1.41 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C	0.55	40.0	3.86e-01	76.1%	70.8%

D2 medium residues 152-231_272-308

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3gw6F01	4.10.1090.10	Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4	0.65	40.0	4.43e-01	74.4%	77.4%
1txqA00	2.30.30.190	Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain	0.54	28.0	3.39e-01	70.9%	75.7%
1wzvA00	3.10.110.10	Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme	0.51	34.0	3.21e-01	76.1%	53.3%
4hizA04	4.10.1090.10	Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4	0.51	43.0	3.91e-01	92.3%	69.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4265807	77.1.1.4 ↗	beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Chitin_bind_4	0.61	37.0	4.67e-01	86.3%	100.0%