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IMGVR_UViG_3300031864_000034-3300031864-Ga0315538_10031693
Arc-VirIMGVR_UViG_3300031864_000034-3300031864-Ga0315538_10031693
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-113
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.71 | 59.0 | 5.25e-01 | 88.7% | 68.4% |
| 4g7wA00 | 2.40.30.280 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Vibrio phage CTXphi pIII, N-terminal N1 domain | 0.70 | 50.0 | 4.48e-01 | 74.6% | 60.2% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 47.0 | 4.46e-01 | 70.4% | 58.1% |
| 2as9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 58.0 | 5.29e-01 | 98.6% | 68.1% |
| 1wxrA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.68 | 48.0 | 3.21e-01 | 97.2% | 20.2% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.66 | 60.0 | 5.37e-01 | 97.2% | 77.9% |
| 1ivzA00 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.66 | 45.0 | 3.70e-01 | 71.8% | 57.6% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.65 | 55.0 | 4.66e-01 | 95.8% | 56.5% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.65 | 56.0 | 4.19e-01 | 95.8% | 39.8% |
| 3iuwA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.64 | 55.0 | 5.35e-01 | 94.4% | 83.5% |
| 2o8lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 55.0 | 4.87e-01 | 97.2% | 66.3% |
| 1bwvA01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.63 | 47.0 | 3.86e-01 | 78.9% | 72.7% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 53.0 | 4.70e-01 | 95.8% | 64.7% |
| 4hoiB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 42.0 | 3.68e-01 | 73.2% | 98.2% |
| 2djwA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.59 | 41.0 | 4.09e-01 | 73.2% | 68.9% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 40.0 | 3.73e-01 | 70.4% | 64.1% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.59 | 41.0 | 3.92e-01 | 71.8% | 66.7% |
| 3i4pA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 40.0 | 3.81e-01 | 71.8% | 66.7% |
| 2gqqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.58 | 40.0 | 3.77e-01 | 71.8% | 65.9% |
| 1g3pA02 | 3.90.450.1 | Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 | 0.58 | 41.0 | 3.68e-01 | 76.1% | 75.0% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.58 | 50.0 | 3.92e-01 | 100.0% | 78.1% |
| 4y85C01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 44.0 | 3.69e-01 | 94.4% | 47.6% |
| 1blxA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 49.0 | 4.54e-01 | 95.8% | 82.6% |
| 1tolA01 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.56 | 39.0 | 3.78e-01 | 73.2% | 65.9% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.56 | 33.0 | 3.65e-01 | 93.0% | 76.9% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 40.0 | 3.65e-01 | 77.5% | 66.3% |
| 2nwuB01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.55 | 43.0 | 3.56e-01 | 93.0% | 47.6% |
| 1g3pA01 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.55 | 38.0 | 3.60e-01 | 73.2% | 61.4% |
| 2x9aA00 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.54 | 38.0 | 4.10e-01 | 73.2% | 85.2% |
| 1mkmA03 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 44.0 | 3.43e-01 | 94.4% | 82.6% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 47.0 | 4.12e-01 | 100.0% | 89.9% |
| 3okxB00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.53 | 45.0 | 3.59e-01 | 95.8% | 69.1% |
| 3ndiA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 42.0 | 3.10e-01 | 88.7% | 83.2% |
| 6vbkA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.53 | 45.0 | 3.97e-01 | 100.0% | 89.2% |
| 2g7uC02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 42.0 | 3.25e-01 | 93.0% | 77.5% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.52 | 42.0 | 3.56e-01 | 91.5% | 90.4% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.51 | 35.0 | 3.43e-01 | 71.8% | 83.7% |
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 42.0 | 3.26e-01 | 94.4% | 63.1% |
| 3cqzH00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 41.0 | 3.57e-01 | 93.0% | 98.3% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.51 | 27.0 | 3.11e-01 | 94.4% | 72.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032883 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.73 | 65.0 | 5.56e-01 | 94.4% | 65.7% |
| 4032900 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 64.0 | 5.52e-01 | 94.4% | 70.5% |
| 3590201 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 64.0 | 5.53e-01 | 95.8% | 66.7% |
| 1779597 | 1.15.1.1 ↗ | beta barrels › cradle loop barrel › Baseplate wedge protein gp7 domain V › Baseplate wedge protein gp7 domain V › Gp7_5th | 0.72 | 52.0 | 4.64e-01 | 76.1% | 92.1% |
| 4638448 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 59.0 | 5.07e-01 | 97.2% | 59.0% |
| 3946118 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 61.0 | 6.06e-01 | 94.4% | 94.7% |
| 3216247 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.70 | 56.0 | 5.16e-01 | 95.8% | 67.8% |
| 3974369 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 56.0 | 5.24e-01 | 95.8% | 71.8% |
| 4260208 | 1.1.13.62 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 | 0.68 | 59.0 | 5.09e-01 | 93.0% | 65.7% |
| 3842059 | 11.1.1.927 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29951 | 0.68 | 49.0 | 4.06e-01 | 76.1% | 68.0% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 59.0 | 4.89e-01 | 98.6% | 72.0% |
| 3797617 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.66 | 47.0 | 3.61e-01 | 74.6% | 67.3% |
| 3894561 | 221.1.2.16 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C | 0.65 | 44.0 | 3.99e-01 | 70.4% | 99.0% |
| 3995788 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.65 | 42.0 | 4.55e-01 | 73.2% | 78.3% |
| 4342567 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.65 | 56.0 | 4.72e-01 | 97.2% | 58.3% |
| 3990851 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.64 | 41.0 | 4.48e-01 | 74.6% | 78.3% |
| 373012 | 1.1.9.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 | 0.64 | 55.0 | 5.32e-01 | 94.4% | 82.5% |
| 4003569 | 389.2.1.0 ↗ | few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors | 0.62 | 41.0 | 4.42e-01 | 73.2% | 80.0% |
| 3725920 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.62 | 42.0 | 3.86e-01 | 71.8% | 53.7% |
| 4328622 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.61 | 54.0 | 4.59e-01 | 97.2% | 60.0% |
| 3349972 | 1.1.7.55 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 | 0.60 | 52.0 | 4.30e-01 | 97.2% | 66.9% |
| 4176978 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.60 | 54.0 | 3.73e-01 | 100.0% | 41.7% |
| 4300660 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.60 | 53.0 | 4.42e-01 | 97.2% | 57.5% |
| 4538400 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.60 | 52.0 | 4.28e-01 | 97.2% | 56.9% |
| 3384464 | 304.127.1.0 ↗ | a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain | 0.60 | 50.0 | 4.07e-01 | 91.5% | 61.5% |
| 3948350 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.59 | 51.0 | 4.58e-01 | 95.8% | 84.0% |
| 4026033 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.59 | 53.0 | 4.52e-01 | 97.2% | 81.8% |
| 3905320 | 304.166.1.10 ↗ | a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29951 | 0.59 | 49.0 | 4.14e-01 | 91.5% | 67.5% |
| 3990850 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.59 | 42.0 | 4.41e-01 | 74.6% | 92.3% |
| 3690148 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.58 | 51.0 | 3.73e-01 | 98.6% | 47.2% |
| 3353869 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 50.0 | 4.73e-01 | 97.2% | 96.5% |
| 4886283 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.58 | 52.0 | 3.59e-01 | 100.0% | 44.3% |
| 4656128 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.56 | 48.0 | 3.61e-01 | 100.0% | 64.2% |
| 406956 | 392.1.1.1 ↗ | beta meanders › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › Phage_Coat_A | 0.56 | 39.0 | 4.17e-01 | 73.2% | 83.9% |
| 3664467 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.56 | 49.0 | 3.99e-01 | 97.2% | 70.0% |
| 3435375 | 60.1.1.10 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › PF28898 | 0.55 | 47.0 | 3.92e-01 | 97.2% | 84.6% |
| 3404972 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 48.0 | 2.93e-01 | 95.8% | 86.2% |
| 3734783 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.55 | 49.0 | 3.10e-01 | 98.6% | 90.4% |
| 1815425 | 319.3.1.1 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN | 0.55 | 41.0 | 3.66e-01 | 94.4% | 56.0% |
| 4349227 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 48.0 | 3.34e-01 | 100.0% | 41.2% |
| 4131458 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 47.0 | 3.31e-01 | 100.0% | 41.3% |
| 137231 | 392.1.1.1 ↗ | beta meanders › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › Phage_Coat_A | 0.53 | 37.0 | 3.94e-01 | 71.8% | 88.5% |
| 3491527 | 11.1.1.629 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4517 | 0.51 | 45.0 | 3.69e-01 | 98.6% | 83.1% |
| 3440500 | 5.1.3.151 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 | 0.51 | 42.0 | 2.76e-01 | 97.2% | 81.4% |
| 3744824 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 43.0 | 2.78e-01 | 95.8% | 93.0% |
| 5071962 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 41.0 | 3.35e-01 | 94.4% | 74.5% |