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IMGVR_UViG_3300031864_000034-3300031864-Ga0315538_10031697

Arc-Vir

IMGVR_UViG_3300031864_000034-3300031864-Ga0315538_10031697

Quality

90.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-113
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 43.0 4.55e-01 96.8% 80.5%
1c3kA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 45.0 4.07e-01 100.0% 100.0%
4me8A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.53 39.0 3.69e-01 93.6% 64.1%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 34.0 2.87e-01 95.7% 39.9%
1w9sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 31.0 2.83e-01 97.9% 42.5%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 38.0 3.23e-01 81.9% 54.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3347639 11.2.1.17 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.57 38.0 3.46e-01 70.2% 98.5%
3293728 10.10.1.4 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › ATS3 0.56 35.0 3.42e-01 98.9% 55.2%
154364 10.1.1.21 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.51 38.0 3.28e-01 81.9% 55.2%
D2 high residues 128-135_312-370
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zarA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 37.0 3.37e-01 83.6% 45.4%
4logB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 42.0 2.98e-01 92.5% 43.5%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 37.0 3.09e-01 73.1% 86.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001157 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.54 43.0 3.95e-01 85.1% 96.5%
3349352 219.1.1.71 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.52 41.0 3.03e-01 89.6% 44.7%
D3 medium residues 139-165_271-311
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.64 50.0 4.26e-01 86.8% 54.8%
4hsqA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 55.0 4.42e-01 100.0% 67.4%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.64 55.0 4.05e-01 100.0% 40.4%
2pn5A10 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.62 53.0 4.23e-01 100.0% 58.2%
4xotA03 2.40.30.250 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 47.0 4.47e-01 91.2% 91.9%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.60 50.0 4.41e-01 100.0% 70.9%
3l4yA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 45.0 3.65e-01 85.3% 55.8%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.58 45.0 3.74e-01 86.8% 58.5%
2rttA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 4.04e-01 89.7% 66.7%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.69e-01 76.5% 91.2%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.58 45.0 4.61e-01 85.3% 90.6%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.57 46.0 4.35e-01 98.5% 95.7%
3ndzE00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 4.01e-01 91.2% 66.4%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 42.0 4.09e-01 82.4% 96.2%
4j3vA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 42.0 4.13e-01 83.8% 83.1%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.74e-01 83.8% 75.9%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 42.0 4.15e-01 83.8% 96.0%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.59e-01 88.2% 84.1%
4iknA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.55 45.0 4.03e-01 95.6% 70.8%
1rxlA00 2.60.40.1570 Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin 0.55 44.0 3.61e-01 94.1% 58.7%
2yocB05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 41.0 3.59e-01 85.3% 56.2%
3wy2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 38.0 3.79e-01 86.8% 71.2%
2vncA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 41.0 3.68e-01 89.7% 56.0%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.53 41.0 3.71e-01 89.7% 67.0%
1yllC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 3.67e-01 91.2% 71.6%
1bu8A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 39.0 3.40e-01 89.7% 50.9%
8dwoK02 2.60.40.4310 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain B 0.52 40.0 4.12e-01 92.6% 95.3%
1f00I02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.84e-01 91.2% 84.3%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 43.0 3.97e-01 98.5% 98.9%
1yoxA00 3.60.160.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Mitochondrial biogenesis AIM24 0.51 41.0 3.18e-01 100.0% 48.4%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957583 3386.2.1.0 beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 0.85 68.0 6.76e-01 85.3% 100.0%
3978227 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.82 68.0 6.60e-01 88.2% 97.3%
4996749 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 54.0 3.66e-01 100.0% 37.5%
4598674 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 50.0 4.01e-01 91.2% 60.8%
3519490 11.1.5.104 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Ribophorin_I 0.60 47.0 4.08e-01 88.2% 65.5%
3673946 12.1.1.63 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Raffinose_syn 0.60 46.0 4.36e-01 85.3% 78.3%
3250952 11.1.1.900 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM49 0.60 47.0 4.29e-01 88.2% 65.6%
3927764 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.59 50.0 4.40e-01 100.0% 71.8%
3783394 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 47.0 3.98e-01 89.7% 65.8%
3807365 11.1.5.90 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TPD1_C 0.58 45.0 4.11e-01 86.8% 73.7%
3453510 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 42.0 3.75e-01 79.4% 56.2%
4993499 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 47.0 4.51e-01 94.1% 87.5%
5054260 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.15e-01 95.6% 61.8%
4447642 11.1.5.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF29228 0.57 43.0 3.60e-01 88.2% 48.6%
5005647 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 48.0 4.43e-01 100.0% 74.5%
3194376 11.1.5.37 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD 0.57 47.0 4.03e-01 95.6% 72.2%
3905924 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 3.14e-01 89.7% 69.2%
5061129 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.78e-01 95.6% 52.9%
3740389 11.1.5.37 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD 0.56 48.0 4.12e-01 100.0% 71.3%
4412634 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 3.92e-01 100.0% 55.4%
4926982 75.1.1.4 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like 0.55 40.0 3.42e-01 80.9% 68.0%
3421900 10.2.1.83 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › GUB_WAK_bind 0.54 44.0 3.28e-01 98.5% 75.8%
3579435 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.97e-01 83.8% 98.7%
4975524 75.1.1.4 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like 0.54 40.0 3.34e-01 82.4% 66.2%
4227844 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 45.0 3.84e-01 100.0% 57.6%
4308065 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.57e-01 94.1% 83.6%
1806777 12.1.1.53 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C_2 0.54 40.0 3.79e-01 83.8% 69.4%
3831628 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.60e-01 100.0% 57.2%
4934359 75.1.1.4 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Cyclophil_like 0.53 39.0 3.33e-01 82.4% 70.8%
3936407 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 40.0 3.75e-01 86.8% 86.7%
3275234 11.1.4.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7035 0.52 40.0 3.57e-01 91.2% 77.3%
5060453 11.1.1.244 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_5 0.51 40.0 3.83e-01 91.2% 92.9%
D4 medium residues 166-270
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.84e-01 76.2% 100.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.91e-01 77.1% 84.7%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.88e-01 77.1% 92.7%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 38.0 4.05e-01 79.0% 87.2%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 39.0 3.43e-01 77.1% 83.4%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 44.0 3.44e-01 87.6% 69.1%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 4.02e-01 82.9% 92.4%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.52 45.0 4.06e-01 93.3% 81.9%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 37.0 2.74e-01 78.1% 89.8%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 44.0 3.24e-01 95.2% 39.4%
4jqtA01 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 38.0 3.18e-01 81.0% 49.3%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 4.22e-01 86.7% 95.6%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 43.0 4.41e-01 94.3% 98.1%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 42.0 3.09e-01 93.3% 36.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957557 3629.1.1.0 beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain 0.71 60.0 5.89e-01 88.6% 86.4%
5002774 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 45.0 4.35e-01 100.0% 62.5%
4964412 274.1.1.66 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7266 0.64 42.0 4.36e-01 95.2% 70.0%
5022841 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.64 44.0 4.51e-01 70.5% 100.0%
5066808 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 40.0 3.82e-01 99.0% 53.7%
4336160 319.1.1.21 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › GvpH 0.60 39.0 4.37e-01 97.1% 86.3%
4011093 319.1.1.14 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 0.58 40.0 4.07e-01 96.2% 74.0%
1877732 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.55 44.0 3.87e-01 85.7% 87.7%
3618917 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 4.37e-01 89.5% 88.2%