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IMGVR_UViG_3300031867_000452-3300031867-Ga0326511_1000077738
Arc-VirIMGVR_UViG_3300031867_000452-3300031867-Ga0326511_1000077738
Identity
- Kingdom:
- archaea
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-91
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qoyA00 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.69 | 57.0 | 3.84e-01 | 89.3% | 70.3% |
| 4o7iA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.66 | 32.0 | 2.51e-01 | 95.2% | 21.4% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 43.0 | 4.04e-01 | 98.8% | 54.5% |
| 7sf8A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 48.0 | 3.43e-01 | 90.5% | 55.2% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.25e-01 | 72.6% | 63.8% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.51e-01 | 70.2% | 83.5% |
| 2eyqA07 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.53 | 35.0 | 2.87e-01 | 76.2% | 38.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047150 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.78 | 65.0 | 4.79e-01 | 88.1% | 42.5% |
| 5036014 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.75 | 55.0 | 5.32e-01 | 77.4% | 77.9% |
| 3614292 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.75 | 51.0 | 3.98e-01 | 81.0% | 34.7% |
| 3622196 | 604.1.1.63 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 | 0.74 | 60.0 | 5.21e-01 | 97.6% | 59.2% |
| 3411883 | 604.1.1.63 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 | 0.73 | 55.0 | 4.88e-01 | 88.1% | 55.8% |
| 3287147 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.73 | 59.0 | 4.61e-01 | 88.1% | 42.4% |
| 3916642 | 192.2.1.56 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 | 0.73 | 60.0 | 4.88e-01 | 88.1% | 64.0% |
| 3614763 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.72 | 65.0 | 5.73e-01 | 97.6% | 68.3% |
| 3787064 | 7534.1.1.0 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase | 0.72 | 62.0 | 4.14e-01 | 91.7% | 63.3% |
| 5023516 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.71 | 59.0 | 4.23e-01 | 89.3% | 31.9% |
| 3496957 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.71 | 57.0 | 3.42e-01 | 85.7% | 18.0% |
| 4940192 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.71 | 58.0 | 5.27e-01 | 89.3% | 66.7% |
| 3611776 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.70 | 57.0 | 4.76e-01 | 86.9% | 85.0% |
| 3553628 | 109.4.1.120 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 | 0.70 | 57.0 | 3.71e-01 | 86.9% | 22.1% |
| 3731212 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.70 | 53.0 | 5.33e-01 | 81.0% | 78.8% |
| 4251053 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.70 | 54.0 | 3.75e-01 | 81.0% | 38.8% |
| 5077994 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.69 | 54.0 | 4.51e-01 | 83.3% | 67.9% |
| 3614788 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.69 | 48.0 | 3.16e-01 | 73.8% | 44.4% |
| 3547409 | 604.1.1.153 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 | 0.68 | 55.0 | 4.14e-01 | 86.9% | 47.5% |
| 3716174 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 60.0 | 5.48e-01 | 100.0% | 73.6% |
| 3498627 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.68 | 52.0 | 3.65e-01 | 81.0% | 38.8% |
| 3717247 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.67 | 51.0 | 3.74e-01 | 81.0% | 38.2% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.66 | 55.0 | 4.89e-01 | 95.2% | 64.3% |
| 3840552 | 5086.1.1.90 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I | 0.66 | 58.0 | 4.61e-01 | 95.2% | 57.0% |
| 3971074 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.66 | 38.0 | 2.77e-01 | 72.6% | 20.4% |
| 3985490 | 192.2.1.5 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 | 0.65 | 57.0 | 4.92e-01 | 92.9% | 64.5% |
| 4985937 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 46.0 | 4.04e-01 | 72.6% | 98.3% |
| 1883380 | 1105.1.1.1 ↗ | alpha complex topology › Retinol uptake receptor STRA6 › Retinol uptake receptor STRA6 › Retinol uptake receptor STRA6 › RBP_receptor | 0.64 | 58.0 | 3.48e-01 | 100.0% | 43.8% |
| 3917696 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.64 | 54.0 | 4.02e-01 | 90.5% | 38.5% |
| 5053927 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.62 | 43.0 | 3.64e-01 | 72.6% | 95.7% |
| 3695389 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 47.0 | 3.40e-01 | 83.3% | 34.2% |
| 3775826 | 4016.1.1.0 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase | 0.59 | 40.0 | 3.38e-01 | 78.6% | 40.7% |
| 5079289 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 4.32e-01 | 85.7% | 93.3% |
| 3217313 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.57 | 51.0 | 3.36e-01 | 98.8% | 48.8% |
| 3538512 | 3892.1.1.0 ↗ | alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II | 0.56 | 42.0 | 3.37e-01 | 78.6% | 63.1% |
| None | — | 0.56 | 39.0 | 3.33e-01 | 72.6% | 66.9% | |
| 4997717 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.55 | 51.0 | 3.39e-01 | 100.0% | 58.7% |
| 3212962 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.54 | 49.0 | 3.25e-01 | 100.0% | 62.9% |
| 3785380 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.54 | 45.0 | 2.82e-01 | 88.1% | 63.9% |
| 4005987 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 36.0 | 3.29e-01 | 71.4% | 92.0% |
| 5067264 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.54 | 38.0 | 3.32e-01 | 72.6% | 70.0% |
| 5078889 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 46.0 | 3.99e-01 | 92.9% | 72.0% |
| 3586120 | 109.4.1.1815 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30838 | 0.53 | 36.0 | 2.16e-01 | 72.6% | 9.8% |
| 3979431 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.50 | 37.0 | 3.10e-01 | 78.6% | 72.7% |