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IMGVR_UViG_3300031867_009493-3300031867-Ga0326511_100124797

Arc-Vir

IMGVR_UViG_3300031867_009493-3300031867-Ga0326511_100124797

Quality

76.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.68 38.0 3.25e-01 86.6% 34.3%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 38.0 4.09e-01 82.1% 63.8%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.68 50.0 5.01e-01 86.6% 76.8%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.65 58.0 3.52e-01 100.0% 18.8%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 43.0 3.57e-01 77.6% 38.3%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 37.0 3.20e-01 86.6% 35.6%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.64 50.0 4.87e-01 94.0% 77.0%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 38.0 3.91e-01 70.1% 60.6%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.63 49.0 4.59e-01 94.0% 68.3%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 43.0 3.85e-01 71.6% 88.3%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 44.0 3.64e-01 74.6% 88.0%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.62 40.0 4.19e-01 92.5% 72.1%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 46.0 3.88e-01 80.6% 92.8%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.60 37.0 3.50e-01 89.6% 49.4%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.60 45.0 3.24e-01 83.6% 93.2%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.59 35.0 4.02e-01 83.6% 90.5%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.59 42.0 3.83e-01 74.6% 65.2%
4ms4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 50.0 3.69e-01 100.0% 73.3%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.42e-01 83.6% 45.5%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 42.0 3.75e-01 79.1% 84.8%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 48.0 3.35e-01 100.0% 73.3%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 45.0 3.79e-01 95.5% 77.2%
5jicA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.20e-01 86.6% 31.9%
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.55 41.0 3.15e-01 85.1% 87.4%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 47.0 3.34e-01 100.0% 76.0%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.55 39.0 3.40e-01 76.1% 61.5%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 49.0 2.92e-01 100.0% 51.6%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 4.35e-01 94.0% 83.1%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.54 39.0 2.72e-01 80.6% 25.1%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 46.0 3.42e-01 100.0% 59.1%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 3.29e-01 89.6% 39.3%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 46.0 3.34e-01 100.0% 69.3%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 37.0 3.12e-01 74.6% 70.9%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 44.0 3.20e-01 98.5% 69.7%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 44.0 2.79e-01 95.5% 45.4%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 38.0 3.52e-01 79.1% 70.0%
3ct9B01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 43.0 3.09e-01 100.0% 86.7%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 38.0 3.89e-01 79.1% 82.1%
6i8wB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 2.96e-01 100.0% 78.2%
3eeiA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 43.0 3.08e-01 100.0% 76.6%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 43.0 3.03e-01 100.0% 77.9%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.82e-01 98.5% 58.4%
3bjeA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 42.0 2.83e-01 100.0% 86.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944305 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 45.0 3.63e-01 77.6% 35.2%
5001101 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.69 38.0 4.02e-01 92.5% 60.0%
1499696 12.6.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.68 48.0 4.91e-01 88.1% 75.8%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 42.0 3.52e-01 77.6% 36.5%
3947302 2484.1.1.251 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26691 0.67 49.0 3.62e-01 77.6% 48.6%
4999643 268.1.1.1 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.66 48.0 3.92e-01 77.6% 42.7%
3915471 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.66 38.0 4.57e-01 85.1% 95.0%
4989913 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 55.0 3.74e-01 98.5% 26.8%
None 0.64 38.0 3.04e-01 77.6% 28.3%
3574186 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.63 47.0 3.32e-01 100.0% 24.5%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.63 45.0 3.66e-01 76.1% 75.2%
4981013 268.1.1.0 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.62 44.0 3.80e-01 74.6% 50.5%
3968112 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 42.0 3.23e-01 70.1% 63.0%
3688914 283.1.1.4 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.62 41.0 3.34e-01 70.1% 49.3%
3232262 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.61 52.0 4.44e-01 95.5% 80.9%
4944998 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 41.0 3.37e-01 70.1% 56.0%
4984034 873.1.1.20 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125 0.61 51.0 3.88e-01 95.5% 81.2%
3550232 389.1.1.1 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.60 35.0 3.30e-01 85.1% 45.9%
3699929 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 45.0 3.41e-01 82.1% 34.7%
4152365 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.60 35.0 4.08e-01 85.1% 86.7%
3605286 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.60 46.0 4.15e-01 86.6% 76.0%
4927372 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.54e-01 74.6% 49.6%
4928566 223.2.1.62 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.59 43.0 3.60e-01 77.6% 60.0%
4945232 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 44.0 3.64e-01 79.1% 56.7%
4928516 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.55e-01 76.1% 43.2%
3276550 4312.2.1.0 a+b two layers › RelE-like › YaeB-like › YaeB-like 0.58 44.0 3.93e-01 79.1% 58.1%
5083099 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.58 49.0 3.83e-01 98.5% 84.4%
3743864 109.4.1.1787 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup188_N-subdom_III 0.58 48.0 2.64e-01 94.0% 10.5%
4980695 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 42.0 3.64e-01 79.1% 58.2%
4127691 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.57 48.0 4.11e-01 97.0% 86.1%
3388100 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 44.0 2.78e-01 86.6% 28.2%
3251867 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.57 40.0 3.29e-01 74.6% 71.5%
4926979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.41e-01 74.6% 45.2%
4977806 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 41.0 3.38e-01 79.1% 49.2%
4224940 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.56 47.0 3.21e-01 98.5% 75.5%
3390111 223.2.1.16 a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.55 40.0 3.73e-01 79.1% 70.0%
2462225 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.55 47.0 3.35e-01 100.0% 75.0%
4366164 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 46.0 2.90e-01 98.5% 29.6%
3723542 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 47.0 3.91e-01 98.5% 60.2%
4305933 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.55 41.0 4.35e-01 88.1% 100.0%
4310174 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.54 40.0 4.35e-01 88.1% 100.0%
4088743 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.54 41.0 4.28e-01 94.0% 93.3%
4929825 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 37.0 3.25e-01 74.6% 46.2%
5064481 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 43.0 3.50e-01 95.5% 86.0%
3623001 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.54 36.0 3.43e-01 70.1% 87.5%
4387286 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.53 46.0 3.18e-01 100.0% 57.6%
5065158 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.09e-01 79.1% 48.0%
4029539 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 37.0 3.08e-01 73.1% 75.8%
5051015 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 39.0 3.01e-01 79.1% 43.2%
4492624 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 40.0 4.26e-01 92.5% 100.0%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.53 44.0 3.65e-01 98.5% 59.4%
141273 223.2.1.16 a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.52 38.0 3.50e-01 79.1% 69.2%
3200256 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 43.0 3.41e-01 95.5% 58.0%
3989004 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 43.0 2.88e-01 100.0% 29.7%
None 0.51 43.0 2.72e-01 100.0% 42.7%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 43.0 2.87e-01 98.5% 36.5%
5075163 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 44.0 3.47e-01 100.0% 52.0%
185643 223.2.1.11 a+b three layers › Profilin-like › profilin-like › profilin-like › AP3D1,Longin 0.51 37.0 2.89e-01 79.1% 36.1%
4954912 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.51 42.0 3.27e-01 100.0% 90.9%
3973641 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.50 41.0 3.07e-01 97.0% 70.3%