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IMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026818
Arc-VirIMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026818
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-66
Domain cluster:
rep: OP172633.1__WAX05116.1__AB434P2_00043__00038__D17-94
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.92 | 73.0 | 6.40e-01 | 83.3% | 66.7% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.83 | 68.0 | 6.02e-01 | 89.4% | 67.4% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.74 | 55.0 | 5.31e-01 | 78.8% | 100.0% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.74 | 58.0 | 5.66e-01 | 84.8% | 97.2% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.70 | 57.0 | 5.43e-01 | 87.9% | 97.4% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.56 | 50.0 | 3.74e-01 | 100.0% | 85.4% |
| 2ehrA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 43.0 | 3.66e-01 | 87.9% | 84.6% |
| 2gmlA01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.54 | 41.0 | 3.57e-01 | 86.4% | 54.0% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 41.0 | 3.59e-01 | 87.9% | 53.8% |
| 3q8dA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.54 | 41.0 | 3.14e-01 | 81.8% | 50.0% |
| 1yu0A02 | 2.80.20.10 | Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein | 0.53 | 40.0 | 3.24e-01 | 84.8% | 76.0% |
| 3mcaA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 41.0 | 3.64e-01 | 86.4% | 95.1% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 31.0 | 3.26e-01 | 71.2% | 63.3% |
| 7qu8A01 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.51 | 35.0 | 2.64e-01 | 75.8% | 72.6% |
| 2e9xD02 | 3.40.5.60 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.51 | 33.0 | 3.46e-01 | 86.4% | 73.3% |
| 4chkB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 38.0 | 3.43e-01 | 80.3% | 93.4% |
| 1xjvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 44.0 | 3.49e-01 | 100.0% | 83.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.90 | 76.0 | 6.45e-01 | 89.4% | 66.0% |
| 3981632 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.86 | 51.0 | 6.38e-01 | 80.3% | 100.0% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.86 | 67.0 | 7.08e-01 | 83.3% | 91.5% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.86 | 64.0 | 6.49e-01 | 78.8% | 100.0% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.85 | 65.0 | 6.85e-01 | 80.3% | 98.3% |
| 4963571 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.82 | 65.0 | 6.59e-01 | 83.3% | 86.2% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.82 | 62.0 | 6.69e-01 | 80.3% | 100.0% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 59.0 | 6.37e-01 | 78.8% | 96.4% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.78 | 64.0 | 6.27e-01 | 86.4% | 82.9% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.78 | 61.0 | 6.38e-01 | 84.8% | 100.0% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.77 | 61.0 | 6.59e-01 | 83.3% | 100.0% |
| 4930420 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.77 | 64.0 | 6.29e-01 | 89.4% | 85.7% |
| 5075574 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.74 | 57.0 | 5.40e-01 | 84.8% | 96.2% |
| 1176867 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.72 | 58.0 | 5.23e-01 | 87.9% | 89.0% |
| 4933166 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.72 | 55.0 | 5.22e-01 | 83.3% | 97.5% |
| 3981090 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.61 | 32.0 | 3.49e-01 | 77.3% | 60.0% |
| 4679376 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.60 | 45.0 | 3.47e-01 | 81.8% | 53.3% |
| 5006052 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 38.0 | 3.88e-01 | 86.4% | 71.9% |
| 4545465 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.56 | 37.0 | 3.59e-01 | 86.4% | 60.0% |
| 5032036 | 1.1.7.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_U32_C | 0.55 | 42.0 | 4.00e-01 | 84.8% | 70.0% |
| 3302330 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.54 | 37.0 | 2.39e-01 | 71.2% | 80.6% |
| 5002657 | 12.1.1.114 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 | 0.54 | 38.0 | 3.49e-01 | 86.4% | 57.6% |
| 5063097 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 35.0 | 3.54e-01 | 89.4% | 65.7% |
| 3633281 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 36.0 | 2.34e-01 | 71.2% | 45.4% |
| 3386406 | 10.32.1.89 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ape1_N | 0.51 | 33.0 | 2.66e-01 | 87.9% | 32.6% |
D2
medium
residues 67-145
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vziA01 | 2.20.28.100 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain | 0.61 | 23.0 | 3.21e-01 | 75.9% | 68.4% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.61 | 56.0 | 5.25e-01 | 100.0% | 92.6% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.61 | 51.0 | 5.32e-01 | 94.9% | 98.6% |
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.60 | 56.0 | 5.29e-01 | 100.0% | 96.8% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.54 | 50.0 | 4.28e-01 | 100.0% | 98.4% |
| 2yweA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 36.0 | 3.41e-01 | 98.7% | 57.0% |
| 1ameA00 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.53 | 38.0 | 4.14e-01 | 93.7% | 90.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.89 | 59.0 | 6.83e-01 | 100.0% | 91.5% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.84 | 60.0 | 6.96e-01 | 98.7% | 100.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.73 | 52.0 | 5.85e-01 | 98.7% | 96.7% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 56.0 | 6.17e-01 | 94.9% | 98.5% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.70 | 50.0 | 5.71e-01 | 97.5% | 98.3% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.70 | 56.0 | 5.90e-01 | 100.0% | 95.7% |
| 4409090 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.65 | 41.0 | 4.26e-01 | 98.7% | 68.0% |
| 3205316 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.60 | 54.0 | 5.16e-01 | 98.7% | 94.4% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.60 | 56.0 | 5.11e-01 | 100.0% | 90.0% |
| 4890601 | 1.1.7.93 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D3, GTP_EFTU_D2 | 0.56 | 38.0 | 3.53e-01 | 100.0% | 55.6% |